BioLiP

PDB

BioLiP

PDB CCD ID:

CYJ

Number of entries in BioLiP:

Chemical formula:

C16 H27 N3 O6

InChI:

InChI=1S/C16H27N3O6/c17-12(16(24)25)3-1-2-6-19-13-9-18-8-10(4-5-14(20)21)11(13)7-15(22)23/h10-12,18H,1-9,17H2,(H,20,21)(H,22,23)(H,24,25)/b19-13-/t10-,11-,12+/m1/s1

InChIKey:

XKNSCWDBUODVRH-DEBZXTSDSA-N

SMILES:

Software	SMILES
OpenEye OEToolkits 1.5.0	C1C(C(C(=NCCCCC(C(=O)O)N)CN1)CC(=O)O)CCC(=O)O
CACTVS 3.341	N[CH](CCCCN=C1CNC[CH](CCC(O)=O)[CH]1CC(O)=O)C(O)=O
ACDLabs 10.04	O=C(O)C(N)CCCC/N=C1/CNCC(CCC(=O)O)C1CC(=O)O
OpenEye OEToolkits 1.5.0	C1[C@H]([C@H](/C(=N\CCCC[C@@H](C(=O)O)N)/CN1)CC(=O)O)CCC(=O)O
CACTVS 3.341	N[C@@H](CCCCN=C1CNC[C@@H](CCC(O)=O)[C@H]1CC(O)=O)C(O)=O

Name:

(Z)-N~6~-[(4R,5S)-5-(2-CARBOXYETHYL)-4-(CARBOXYMETHYL)PIPERIDIN-3-YLIDENE]-L-LYSINE;
2-AMINO-6-(3-CARBOXY-1-[(4-CARBOXY-2-OXO-BUTYLAMINO)-METHYL]-PROPYLIDENEAMINO)-HEXANOIC ACID

ZINC:

ZINC000058660403

Reference:

Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).

Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).