BioLiP

PDB

BioLiP

PDB CCD ID:

TK8

Number of entries in BioLiP:

Chemical formula:

C5 H10 O6

InChI:

InChI=1S/C5H10O6/c6-1-2(7)3(8)4(9)5(10)11/h2-4,6-9H,1H2,(H,10,11)/t2-,3+,4-/m1/s1

InChIKey:

QXKAIJAYHKCRRA-FLRLBIABSA-N

SMILES:

Software	SMILES
CACTVS 3.385	OC[C@@H](O)[C@H](O)[C@@H](O)C(O)=O
OpenEye OEToolkits 2.0.7	C(C(C(C(C(=O)O)O)O)O)O
CACTVS 3.385	OC[CH](O)[CH](O)[CH](O)C(O)=O
OpenEye OEToolkits 2.0.7	C([C@H]([C@@H]([C@H](C(=O)O)O)O)O)O

Name:

D-xylonic acid;
(2~{R},3~{S},4~{R})-2,3,4,5-tetrakis(oxidanyl)pentanoic acid;
(2R,3S,4R)-2,3,4,5-tetrahydroxypentanoic acid;
xylonic acid

ZINC:

ZINC000008551175

Reference:

Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).

Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).