BioLiP

PDB

BioLiP

PDB CCD ID:

U33

Number of entries in BioLiP:

Chemical formula:

C9 H11 Br N2 O5

InChI:

InChI=1S/C9H11BrN2O5/c10-4-2-12(9(16)11-8(4)15)7-1-5(14)6(3-13)17-7/h2,5-7,13-14H,1,3H2,(H,11,15,16)/t5-,6+,7+/m0/s1

InChIKey:

WOVKYSAHUYNSMH-RRKCRQDMSA-N

SMILES:

Software	SMILES
CACTVS 3.341	OC[CH]1O[CH](C[CH]1O)N2C=C(Br)C(=O)NC2=O
OpenEye OEToolkits 1.5.0	C1C(C(OC1N2C=C(C(=O)NC2=O)Br)CO)O
ACDLabs 10.04	BrC=1C(=O)NC(=O)N(C=1)C2OC(C(O)C2)CO
OpenEye OEToolkits 1.5.0	C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)Br)CO)O
CACTVS 3.341	OC[C@H]1O[C@H](C[C@@H]1O)N2C=C(Br)C(=O)NC2=O

Name:

5-BROMO-2'-DEOXY URIDINE

ChEMBL:

CHEMBL222280

DrugBank:

DB12028

ZINC:

ZINC000001081243

Reference:

Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).

Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).