BioLiP

PDB

BioLiP

PDB CCD ID:

VDF

Number of entries in BioLiP:

Chemical formula:

C5 H11 O8 P

InChI:

InChI=1S/C5H11O8P/c6-2-1-12-5(8)4(3(2)7)13-14(9,10)11/h2-8H,1H2,(H2,9,10,11)/t2-,3-,4+,5-/m0/s1

InChIKey:

QIAIUTJEZJIPSH-KLVWXMOXSA-N

SMILES:

Software	SMILES
CACTVS 3.385	O[C@H]1CO[C@H](O)[C@H](O[P](O)(O)=O)[C@H]1O
OpenEye OEToolkits 2.0.7	C1C(C(C(C(O1)O)OP(=O)(O)O)O)O
OpenEye OEToolkits 2.0.7	C1[C@@H]([C@@H]([C@H]([C@H](O1)O)OP(=O)(O)O)O)O
CACTVS 3.385	O[CH]1CO[CH](O)[CH](O[P](O)(O)=O)[CH]1O

Name:

2-O-phosphono-beta-L-arabinopyranose;
2-O-phosphono-beta-L-arabinose;
2-O-phosphono-L-arabinose;
2-O-phosphono-arabinose;
[(2S,3R,4S,5S)-2,4,5-tris(oxidanyl)oxan-3-yl] dihydrogen phosphate

Reference:

Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).

Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).