DeepMSA2 result for job DEEPMSA986

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User Input

>DEEPMSA986 (350 residues)
>protein-A
GLEKDFLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRHFISGDEPKEKLELV
SYFGKRPPGVLHCTTKFCDYKAAGAEEYAQQEVVKRSYGKAFKLSISALFVTPKTAGAQV
VLTDQELQLWPSDLDKPSASEGLPPGSRAHVTLGCAADVQPVQTGLDLLDILQQVKGGSQ
GEAVGELPRGKLYSLGKGRWMLSLTKKMEVKAIFTGYYG
>protein-B
EVQLEESGGGLVQPGGSLRLSCAVSGITLDDFGIGWFRQAPGKEREGVACISPGYEHIYY
ADSAKGRFTISRDNAKNTVYLQMNNLKPWDTGVYYCAADNDLPDRLWGGSDWSDPSPYDY
WGQGTQVTVSS

User Configuration

MSA generation pipeline: DeepMSA2 with Uniclust30, Uniref90, BFD, MGnify and IMG/M
protein type: multimer: hetero-oligomer (heteromer)

Paired Multiple Sequence Alignments

Alignment depth: Nf=6.6561, number of sequences=145

No. of MSA	MSA	Mscore	A3M	ALN
1	qMSA.hhb-qMSA	0.389	qMSA.hhb-qMSA.a3m	qMSA.hhb-qMSA.aln
2	qMSA.jac-qMSA.hhb	0.372	qMSA.jac-qMSA.hhb.a3m	qMSA.jac-qMSA.hhb.aln
3	qMSA.hh3-qMSA.hhb	0.37	qMSA.hh3-qMSA.hhb.a3m	qMSA.hh3-qMSA.hhb.aln
4	qMSA-qMSA.hhb	0.368	qMSA-qMSA.hhb.a3m	qMSA-qMSA.hhb.aln
5	qMSA.jac-qMSA	0.359	qMSA.jac-qMSA.a3m	qMSA.jac-qMSA.aln
6	qMSA.hh3-qMSA	0.357	qMSA.hh3-qMSA.a3m	qMSA.hh3-qMSA.aln
7	q4JGI-qMSA.hhb	0.355	q4JGI-qMSA.hhb.a3m	q4JGI-qMSA.hhb.aln
8	qMSA-qMSA	0.355	qMSA-qMSA.a3m	qMSA-qMSA.aln
9	q3JGI-qMSA.hhb	0.351	q3JGI-qMSA.hhb.a3m	q3JGI-qMSA.hhb.aln
10	q4JGI-qMSA	0.339	q4JGI-qMSA.a3m	q4JGI-qMSA.aln
11	q3JGI-qMSA	0.333	q3JGI-qMSA.a3m	q3JGI-qMSA.aln
12	qMSA.hhb-DeepMSA.hhb	0.327	qMSA.hhb-DeepMSA.hhb.a3m	qMSA.hhb-DeepMSA.hhb.aln
13	DeepMSA.hhb-DeepMSA.hhb	0.29	DeepMSA.hhb-DeepMSA.hhb.a3m	DeepMSA.hhb-DeepMSA.hhb.aln
14	qMSA.jac-DeepMSA.hhb	0.271	qMSA.jac-DeepMSA.hhb.a3m	qMSA.jac-DeepMSA.hhb.aln
15	qMSA.hh3-DeepMSA.hhb	0.269	qMSA.hh3-DeepMSA.hhb.a3m	qMSA.hh3-DeepMSA.hhb.aln
16	qMSA-DeepMSA.hhb	0.266	qMSA-DeepMSA.hhb.a3m	qMSA-DeepMSA.hhb.aln
17	DeepMSA.hhb-qMSA.hhb	0.265	DeepMSA.hhb-qMSA.hhb.a3m	DeepMSA.hhb-qMSA.hhb.aln
18	DeepMSA.hhb-qMSA	0.259	DeepMSA.hhb-qMSA.a3m	DeepMSA.hhb-qMSA.aln
19	q4JGI-DeepMSA.hhb	0.257	q4JGI-DeepMSA.hhb.a3m	q4JGI-DeepMSA.hhb.aln
20	q3JGI-DeepMSA.hhb	0.245	q3JGI-DeepMSA.hhb.a3m	q3JGI-DeepMSA.hhb.aln
21	DeepMSA.jac-DeepMSA.hhb	0.237	DeepMSA.jac-DeepMSA.hhb.a3m	DeepMSA.jac-DeepMSA.hhb.aln
22	DeepMSA.hms-DeepMSA.hhb	0.237	DeepMSA.hms-DeepMSA.hhb.a3m	DeepMSA.hms-DeepMSA.hhb.aln
23	DeepJGI.hms-DeepMSA.hhb	0.23	DeepJGI.hms-DeepMSA.hhb.a3m	DeepJGI.hms-DeepMSA.hhb.aln
24	DeepMSA.hms-qMSA.hhb	0.206	DeepMSA.hms-qMSA.hhb.a3m	DeepMSA.hms-qMSA.hhb.aln
25	DeepMSA.jac-qMSA.hhb	0.206	DeepMSA.jac-qMSA.hhb.a3m	DeepMSA.jac-qMSA.hhb.aln

Download multiple sequence alignment in aln format.

Download multiple sequence alignment in a3m format.

MSAs Generated For Individual Components (DEEPMSA986-A)

No. of MSA	MSA	pLDDT	A3M	ALN
1	DeepMSA.hhb	0.928	DeepMSA.hhb.a3m	DeepMSA.hhb.aln
2	q4JGI	0.923	q4JGI.a3m	q4JGI.aln
3	qMSA.hhb	0.921	qMSA.hhb.a3m	qMSA.hhb.aln
4	DeepJGI.hms	0.918	DeepJGI.hms.a3m	DeepJGI.hms.aln
5	qMSA.hh3	0.918	qMSA.hh3.a3m	qMSA.hh3.aln
6	DeepMSA.jac	0.918	DeepMSA.jac.a3m	DeepMSA.jac.aln
7	DeepMSA.hms	0.916	DeepMSA.hms.a3m	DeepMSA.hms.aln
8	qMSA.jac	0.913	qMSA.jac.a3m	qMSA.jac.aln
9	q3JGI	0.913	q3JGI.a3m	q3JGI.aln
10	qMSA	0.912	qMSA.a3m	qMSA.aln

MSAs Generated For Individual Components (DEEPMSA986-B)

No. of MSA	MSA	pLDDT	A3M	ALN
1	qMSA	0.945	qMSA.a3m	qMSA.aln
2	qMSA.hhb	0.94	qMSA.hhb.a3m	qMSA.hhb.aln
3	DeepMSA.hhb	0.918	DeepMSA.hhb.a3m	DeepMSA.hhb.aln

Reference:

https://doi.org/10.1038/s41592-023-02130-4.

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