Detailed GPCR-I-TASSER Statistics for Q8NFZ6

Submitted Sequence

>sp|Q8NFZ6|VN1R2_HUMAN
MTHTLYPTPFALYPINISAAWHLGPLPVSCFVSNKYQCSLAFGATTGLRVLVVVVPQTQL
SFLSSLCLVSLFLHSLVSAHGEKPTKPVGLDPTLFQVVVGILGNFSLLYYYMFLYFRGYK
PRSTDLILRHLTVADSLVILSKRIPETMATFGLKHFDNYFGCKFLLYAHRVGRGVSIGST
CLLSVFQVITINPRNSRWAEMKVKAPTYIGLSNILCWAFHMLVNAIFPIYTTGKWSNNNI
TKKGDLGYCSAPLSDEVTKSVYAALTSFHDVLCLGLMLWASSSIVLVLYRHKQQVQHICR
NNLYPNSSPGNRAIQSILALVSTFALCYALSFITYVYLALFDNSSWWLVNTAALIIACFP
TISPFVLMCRDPSRSRLCSICCRRNRRFFHDFRKM

Predicted Secondary Structure

                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280                 300                 320                 340                 360                 380
                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |               
Sequence MTHTLYPTPFALYPINISAAWHLGPLPVSCFVSNKYQCSLAFGATTGLRVLVVVVPQTQLSFLSSLCLVSLFLHSLVSAHGEKPTKPVGLDPTLFQVVVGILGNFSLLYYYMFLYFRGYKPRSTDLILRHLTVADSLVILSKRIPETMATFGLKHFDNYFGCKFLLYAHRVGRGVSIGSTCLLSVFQVITINPRNSRWAEMKVKAPTYIGLSNILCWAFHMLVNAIFPIYTTGKWSNNNITKKGDLGYCSAPLSDEVTKSVYAALTSFHDVLCLGLMLWASSSIVLVLYRHKQQVQHICRNNLYPNSSPGNRAIQSILALVSTFALCYALSFITYVYLALFDNSSWWLVNTAALIIACFPTISPFVLMCRDPSRSRLCSICCRRNRRFFHDFRKM
Prediction CCCCCCCCCCSSSSCCHHHHHCCCCCCSSSSSCCCHHHSSSCCCCCCCSSSSSSSSSSSSSHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCSSSSSSSHHHHCHHHHHHHHHHHHHHSSSSCCCCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHCSSSSSSCCCCCCCCCCSSSCSSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCSSSSHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHCC
Conf.Score 98634688732541011244215886404675250442023055457379999850043313468899999999863430135066899998599998899999999999999998388889689999999999999999974899999965540589872389998858756266889999998751998079727653114158677688999999999986146799986875730250665408866676248999999999999999999999888878887643568876113889999988799999999999999999998899999999991789931357999996253674846632379746889999866157631765269

Predicted Solvent Accessibility

                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280                 300                 320                 340                 360                 380
                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |               
Sequence MTHTLYPTPFALYPINISAAWHLGPLPVSCFVSNKYQCSLAFGATTGLRVLVVVVPQTQLSFLSSLCLVSLFLHSLVSAHGEKPTKPVGLDPTLFQVVVGILGNFSLLYYYMFLYFRGYKPRSTDLILRHLTVADSLVILSKRIPETMATFGLKHFDNYFGCKFLLYAHRVGRGVSIGSTCLLSVFQVITINPRNSRWAEMKVKAPTYIGLSNILCWAFHMLVNAIFPIYTTGKWSNNNITKKGDLGYCSAPLSDEVTKSVYAALTSFHDVLCLGLMLWASSSIVLVLYRHKQQVQHICRNNLYPNSSPGNRAIQSILALVSTFALCYALSFITYVYLALFDNSSWWLVNTAALIIACFPTISPFVLMCRDPSRSRLCSICCRRNRRFFHDFRKM
Prediction 74220100000010030300010110100000234142100110213020000013303021013110011024212444443222100011033033333312210021000000353321100000100131012102011211000000231103122000000000001000000000000000000003211003011200100011001100000201030001020333332323332111010023333210000001023112000000001000000011123102101134223322112100000000001002103300100000010333200000000020010010000000111320120010003233402431474

Predicted Normalized B-Factor


Read more about predicted normalized B-factor

  Top 10 Templates Used by GPCR-I-TASSER


Rank PDB
Hit
Iden1Iden2Cov.Norm.
Z-score
Download
Align.
                   20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280                 300                 320                 340                 360                 380
                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |               
Sec.Str
Seq
CCCCCCCCCCSSSSCCHHHHHCCCCCCSSSSSCCCHHHSSSCCCCCCCSSSSSSSSSSSSSHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCSSSSSSSHHHHCHHHHHHHHHHHHHHSSSSCCCCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHCSSSSSSCCCCCCCCCCSSSCSSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCSSSSHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHCC
MTHTLYPTPFALYPINISAAWHLGPLPVSCFVSNKYQCSLAFGATTGLRVLVVVVPQTQLSFLSSLCLVSLFLHSLVSAHGEKPTKPVGLDPTLFQVVVGILGNFSLLYYYMFLYFRGYKPRSTDLILRHLTVADSLVILSKRIPETMATFGLKHFDNYFGCKFLLYAHRVGRGVSIGSTCLLSVFQVITINPRNSRWAEMKVKAPTYIGLSNILCWAFHMLVNAIFPIYTTGKWSNNNITKKGDLGYCSAPLSDEVTKSVYAALTSFHDVLCLGLMLWASSSIVLVLYRHKQQVQHICRNNLYPNSSPGNRAIQSILALVSTFALCYALSFITYVYLALFDNSSWWLVNTAALIIACFPTISPFVLMCRDPSRSRLCSICCRRNRRFFHDFRKM
14n6hA 0.14 0.21 0.89 1.14Download --EDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGK------------VKEAQAAAEQLKTTRNAYIQKYLGSPGARSASSLALAIAITALYSAVCAVGLLGNVLVMFGIVRY---TKMKTATNIYIFNLALADALATSTLPFQSAKYLMET-WPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCPVKALDFR----TPAKAKLINICIWVLASGVGVPIMVM-------AVTRPRDGAVVCMLQPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSVRLL------SGSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDIDRVAALHLCIALGYANSSLNPVLYAFLDENFKRCFRQLCRKPCG--------
21gzmA 0.13 0.14 0.69 1.65Download ------------------------------------------------------------------------------------QFSMLAAYMFLLIMLGFPINFLTL----YVTVQHKKLRPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHA----IMGVAFTWVMALACAAPPLYIPEG-----------MQCSCGTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAA-----QQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL-------------
34n6hA 0.16 0.21 0.93 1.00Download KADNAAQVKDALTKMRAAALDAQKATPPK--LEDKGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLGSPGARSASSLALAIAITALYSAVCAVGLLGNVLVMFGIVR---YTKMKTATNIYIFNLALADALATST--LPFQSAKYLMETWFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCPV----KALDFRTPAKAKLINICIWVLASGVGVPIMVMAVTRPRD-------GAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRS-VRLLSGSKEKDR--SLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDRRDPLVVALHLCIALGYANSSPVLYAFLDENFKRCFRQLCRKPCG--------
44n6hA 0.17 0.19 0.73 1.28Download -------------------------------------------------------------------------SPGARSASSLALAIAITALYSAVCAVGLLGNVLVMFGIVRY---TKMKTATNIYIFNLALADALATST--LPFQSAKYLMETWFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVHPVKA----LDFRTPAKAKLINICIWVLASGVGVPIMVMA-------VTRPRDGAVVCMLQPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSV--------RLLSGSKEKSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDIDRVAALHLCIALGYANSSLNPVLYAFLDENFKRCFRQLCRKPCG--------
53a6pA 0.09 0.19 0.89 1.50Download AMDQVDPNSLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEE----------ENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRIQQTLTMERIFSFLLNTLQENVNKYQQVKTDTSQ-----------ESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLGAAECLLIAVS----------------------RKGKLEDRKPLMVLFGDVAMHYILSAAYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTQFLRSSTQMTWGALFRHEILSRDPLLLAIPKYLRASMTNLVMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNTF
64djh 0.16 0.21 0.73 1.54Download ---------------------------------------------------------------------------------SPAIPVIITAVYSVVFVVGLVGNSLVMFVIIRY---TKMKTATNIYIFNLALADALVTTT--MPFQSTVYMNSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVYIAVC-HPVKALD--FRTP--LKAKIINICIWLLSSSVGIS-AIVLGGTKVR----EDVDVIECSLQFPDDDWDLFMKIVFIFAFVIPVLIIIVCYTLMILRLKSVRLLSGNIFTDAYREKDRNLRRITRLVLVVVAVFVVCWTPIHIFILVEALGSA-ALSSYYFCIALGYTNSSLNPILYAFLDENFKRCFRDFCFP-----------
74n6hA 0.14 0.21 0.87 2.02Download -AALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLGSPGARSASSLALAIAITALYSAVCAVGLLGNVLVMFGIVRY---TKMKTATNIYIFNLALADALATSTLPFQSAKYLME-TWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPV---KALDFRTPAKAKLINICIWVLASGVGVPIMVMAVTRPRD-------GAVVCMLQFPSPWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSVRLL------SGSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDIDRDPLVVAALHLCIALGSLNPVL-----------------------------
83odu 0.14 0.20 0.77 1.32Download --------------------------------------------------------------------------PCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMG---YQKKLRSMTDKYRLHLSVADLLFVIT--LPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVATNSQ-RPR---KLLAEKVVYVGVWIPALLLTIPDFIFANVS-------EADDRYICDRFYPNDLWVVVFQFHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQ--
92ziyA 0.12 0.17 0.81 1.82Download ETWWYNPS------IIVHPHWREFDQV------PDAVY------------------YSLGIFIGICGIIGCGGNGIVIYLFTKTKSL---------------------------------QTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHR---RAFIMIIFVWLWSVLWAIGPIFGWGAYTLEGVLC----NCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLETPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQT------FPWVLTCC
104djh 0.17 0.21 0.70 1.69Download ---------------------------------------------------------------------------------------------SVVFVVGLVGNSLVMFVI---IRYTKMKTATNIYIFNLALADALVTTTM-PFQSTVYLMNSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRT---PLKAKIINICIWLLSSSVGISAIVLGGTKVR-----EDVDVIECSLQFPDDDDLFMKICVFIFAFVIPVLIIIVCYTLMILRLKSVRLLSGNITWDAYREKDRNLRRITRLVLVVVAVFVVCWTPIHIFILVEALGS-AALSSYYFCIALGYTNSSLNPILYAFLDENFKRCFRDFC-------------
(a)All the residues are colored in black; however, those residues in template which are identical to the residue in the query sequence are highlighted in color. Coloring scheme is based on the property of amino acids, where polar are brightly coloured while non-polar residues are colored in dark shade. (more about the colors used)
(b)Rank of templates represents the top ten threading templates used by GPCR-I-TASSER.
(c)Ident1 is the percentage sequence identity of the templates in the threading aligned region with the query sequence.
(d)Ident2 is the percentage sequence identity of the whole template chains with query sequence.
(e)Cov. represents the coverage of the threading alignment and is equal to the number of aligned residues divided by the length of query protein.
(f)Norm. Z-score is the normalized Z-score of the threading alignments. Alignment with a Normalized Z-score >1 mean a good alignment and vice versa.
(g)Download Align. provides the 3D structure of the aligned regions of the threading templates.
(h)The top 10 alignments reported above (in order of their ranking) are from the following threading programs:
       1: Neff-PPAS   2: FFAS-3D   3: cdPPAS   4: SPARKS-X   5: PROSPECT2   6: HHSEARCH2   7: PRC   8: HHSEARCH I   9: SP3   10: HHSEARCH   

  Top 5 Models Predicted by GPCR-I-TASSER

Generated 3D models Estimated local accuracy of models
  • Download Model 1
  • C-score=-1.30 (Read more about C-score)
  • Estimated TM-score = 0.55±0.15
  • Estimated RMSD = 9.8±4.6Å

  • Download Model 2
  • C-score = -2.97

  • Download Model 3
  • C-score = -1.38

  • Download Model 4
  • C-score = -2.59

  • Download Model 5
  • C-score = -2.62


  • [Click on Q8NFZ6_results.tar.bz2 to download the tarball file including all modeling results listed on this page]