GPCR-I-TASSER results for P59539

[Click on P59539_results.tar.bz2 to download the tarball file including all modeling results listed on this page]

  Submitted Sequence

>P59539
MITFLPIIFSILVVVTFVIGNFANGFIALVNSTEWVKRQKISFADQIVTALAVSRVGLLW
VLLLNWYSTVLNPAFCSVELRTTAYNIWAVTGHFSNWPATSLSIFYLLKIANFSNLIFLR
LKRRVKSVILVVLLGPLLFLACHLFVVNMNQIVWTKEYEGNMTWKIKLRRAMYLSDTTVT
MLANLVPFTVTLISFLLLVCSLCKHLKKMQLHGKGSQDPSTKVHIKVLQTVISFFLLRAI
YFVSVIISVWSFKNLENKPVFMFCQAIGFSCSSAHPFILIWGNKKLKQTYLSVLWQMRY

  Predicted Secondary Structure

Sequence                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280
                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   
MITFLPIIFSILVVVTFVIGNFANGFIALVNSTEWVKRQKISFADQIVTALAVSRVGLLWVLLLNWYSTVLNPAFCSVELRTTAYNIWAVTGHFSNWPATSLSIFYLLKIANFSNLIFLRLKRRVKSVILVVLLGPLLFLACHLFVVNMNQIVWTKEYEGNMTWKIKLRRAMYLSDTTVTMLANLVPFTVTLISFLLLVCSLCKHLKKMQLHGKGSQDPSTKVHIKVLQTVISFFLLRAIYFVSVIISVWSFKNLENKPVFMFCQAIGFSCSSAHPFILIWGNKKLKQTYLSVLWQMRY
PredictionCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCSSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Conf.Score97589999999999999999999999999999999927988778799999999999999999987833646743455067999999999980899999999999973576489977999999875270999999999999999999960010004788995026776115689999999999999999999999999999999999998487899999982899999999999999999999999999998751376399999999999969884698831865999999999976449

  Predicted Solvent Accessibility

Sequence                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280
                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   
MITFLPIIFSILVVVTFVIGNFANGFIALVNSTEWVKRQKISFADQIVTALAVSRVGLLWVLLLNWYSTVLNPAFCSVELRTTAYNIWAVTGHFSNWPATSLSIFYLLKIANFSNLIFLRLKRRVKSVILVVLLGPLLFLACHLFVVNMNQIVWTKEYEGNMTWKIKLRRAMYLSDTTVTMLANLVPFTVTLISFLLLVCSLCKHLKKMQLHGKGSQDPSTKVHIKVLQTVISFFLLRAIYFVSVIISVWSFKNLENKPVFMFCQAIGFSCSSAHPFILIWGNKKLKQTYLSVLWQMRY
Prediction73332332113213312331331122002100110044340320110000001110000001232000000112123330000010101221220000000000000000020311000001330331001101312233332113120333132643421111323133322011112333333333321331331022002202330343354441131410220010012021113312311220101133343320111011200210120010102314301300130022037
Values range from 0 (buried residue) to 9 (highly exposed residue)

   Predicted normalized B-factor


  Top 10 templates used by GPCR-I-TASSER

Rank PDB
Hit		Iden1Iden2Cov.Norm.
Z-score		Download
Align.		                   20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280
                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   
Sec.Str
Seq		CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCSSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
MITFLPIIFSILVVVTFVIGNFANGFIALVNSTEWVKRQKISFADQIVTALAVSRVGLLWVLLLNWYSTVLNPAFCSVELRTTAYNIWAVTGHFSNWPATSLSIFYLLKIANFSNLIFLRLKRRVKSVILVVLLGPLLFLACHLFVVNMNQIVWTKEYEGNMTWKIKLRRAMYLSDTTVTMLANLVPFTVTLISFLLLVCSLCKHLKKMQLHGKGSQDPSTKVHIKVLQTVISFFLLRAIYFVSVIISVWSFKNLENKPVFMFCQAIGFSCSSAHPFILIWGNKKLKQTYLSVLWQMRY
14bwbA 0.15 0.20 0.93 2.60Download ---YSKVLVTAIYLALFVVGTVGNGVTLFT-----LAQSLQSRVDYYLGSLALSDLLILLFALPVDLYNFIHPWAFGDAGCKGYYFLREACTYATALNVVSLSVELYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNLSGDGTHPGGLVCTPIVDATLRVVIQLNTFMSFLFPMLVASILNTVAARRLTVM----------VEPGRVQALRRGVLVLRAVVIAFVVCWLPYHVRRLMFVYISDHYFYMLSNALVYVSAAINPILYNLVSANFRQVFLSTLAC---
24djhA 0.13 0.18 0.92 2.35Download -SPAIPVIITAVYSVVFVVGLVGNSLVMFVIIRY--TKMK-TATNIYIFNLALADALVTTTMPFQSTVYLMNSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKAL----DFRTPLKAKIINICIWLLSSSVGISAIVLGGTKVREDVDVIECSLQFPWWDLFMKICVFIFAFVIPVLIIIVCYTLMILRLKSVRLL-------------RNLRRITRLVLVVVAVFVVCWTPIHIFILVEALGSALSSYYFCIALGYTNSSLNPILYAFLDENFKRCFRDFCFP---
34djhA 0.13 0.18 0.92 1.51Download -SPAIPVIITAVYSVVFVVGLVGNSLVMFVIIR----TKMKTATNIYIFNLALADALVTTTMPFQSTVYLMNSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKA----LDFRTPLKAKIINICIWLLSSSVGISAIVLGGTKVREDVDVIECSLQFPDWDLFMKICVFIFAFVIPVLIIIVCYTLMILRLKSVRLL-------------RNLRRITRLVLVVVAVFVVCWTPIHIFILVEALGSALSSYYFCIALGYTNSSLNPILYAFLDENFKRCFRDFCFP---
44iarA 0.12 0.20 0.92 2.60Download ISLPWKVLLVMLLALITLATTLSNAFVIATVYR---TRKLHTPANYLIASLAVTDLLVSILVMPISTMYTVT-GRWTLGQVDFWLSSDITCCTASIWHLCVIALDRYWAIT---DAVEYSAKRTP-KRAAVMIALVWVFSISISLPPFFWRQA--------SECVVNTDHILYT--VYSTVGAFYFPTLLLIALYGRIYVEARSRIADLEDNDDSPGKYLAARERKATKTLGAFIVCWLPFFIISLVMPI----WFHLAIFDFFTWLGYLNSLINPIIYTMSNEDFKQAFHKLIRFK--
52z73A 0.11 0.21 0.98 1.86Download VPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTK---TKSLQTPANMFIINLAFSDFTFSLVNFPLMTISCFLKKIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAAS----KKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLEGLCNCSFDYISDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELNAEMRLAKISIVIVSQFLLSWSPYAVVALAQFGPVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVQF
64djhA 0.12 0.18 0.93 1.72Download -SPAIPVIITAVYSVVFVVGLVGNSLVMFVIIRY---TKMKTATNIYIFNLALADALVTTTMPFQSTVYLMNSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKAL----DFRTPLKAKIINICIWLLSSSVGISAIVLGGTKVREDVDVIECSLQFSWWDLFMKICVFIFAFVIPVLIIIVCYTLMILRLKSVRLLSD-----------RNLRRITRLVLVVVAVFVVCWTPIHIFILVEALGSALSSYYFCIALGYTNSSLNPILYAFLDENFKRCFRDFCFP---
74iarA 0.12 0.20 0.92 2.83Download ISLPWKVLLVMLLALITLATTLSNAFVIATVYR---TRKLHTPANYLIASLAVTDLLVSILVMPISTMYVTGRWTLGQVVCDFWLSSDITCCTASIWHLCVIALDRYWAITDAVEYSAKRTPKRAAVMIALVWVFSISISLPPFFW-RQA---------SECVVN-T---DHILYTVYSTVGAFYFPTLLLIALYGRIYVEARSRIADLEDDSPYLAARERKATKTLGIILGAFIVCWLPFFIISLVMPI----WFHLAIFDFFTWLGYLNSLINPIIYTMSNEDFKQAFHKLIRFK--
84buoA 0.15 0.20 0.94 2.08Download TDIYSKVLVTAIYLALFVVGTVGNSVTLFTLAR---KKSLQSTVDYYLGSLALSDLLILLLVELYNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVVSLSVELYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNLSGDGTHPGGLVCTPIVTATLKVVIQVNTFMSFLFPMLVASILNTVIANKLTVMVHQ---------PGRVQALRRGVLVLRAVVIAFVVCWLPYHVRRLMFCYISDEYFYMLTNALVYVSAAINPILYNLVSANFRQVFLSTL-----
94djhA 0.13 0.18 0.92 1.60Download -SPAIPVIITAVYSVVFVVGLVGNSLVMFVIIR----TKMKTATNIYIFNLALADALVTTTMPFQSTVYLMNSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKA----LDFRTPLKAKIINICIWLLSSSVGISAIVLGGTKVREDVDVIECSLDYSWWDLFMKICVFIFAFVIPVLIIIVCYTLMILRLKSVRLLSD-----------RNLRRITRLVLVVVAVFVVCWTPIHIFILVEALGSALSSYYFCIALGYTNSSLNPILYAFLDENFKRCFRDFCFP---
103rzeA 0.13 0.23 0.87 1.61Download M------PLVVVLSTICLVTVGLNLLVLYAVRS---ERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYL----KYRTKTRASATILGAWFLSFLWVIPILGWNHRREDKCETDFYDV-------TWFKVMTAIINFYLPTLLMLWFYAKIYKAVRHMNRER----------------KAAKQLGFIMAAFILCYFIFFMVIAFCKNCCNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRIL---HI
(a)All the residues are colored in black; however, those residues in template which are identical to the residue in the query sequence are highlighted in color. Coloring scheme is based on the property of amino acids, where polar are brightly coloured while non-polar residues are colored in dark shade. (more about the colors used)
(b)Rank of templates represents the top ten threading templates used by GPCR-I-TASSER.
(c)Ident1 is the percentage sequence identity of the templates in the threading aligned region with the query sequence.
(d)Ident2 is the percentage sequence identity of the whole template chains with query sequence.
(e)Cov. represents the coverage of the threading alignment and is equal to the number of aligned residues divided by the length of query protein.
(f)Norm. Z-score is the normalized Z-score of the threading alignments. Alignment with a Normalized Z-score >1 mean a good alignment and vice versa.
(g)Download Align. provides the 3D structure of the aligned regions of the threading templates.
(h)The top 10 alignments reported above (in order of their ranking) are from the following threading programs:
       1: FFAS-3D   2: SPARKS-X   3: MUSTER   4: HHSEARCH2   5: HHSEARCH I   6: Neff-PPAS   7: HHSEARCH   8: pGenTHREADER   9: wdPPAS   10: PROSPECT2   

  Top 5 Models predicted by GPCR-I-TASSER

Generated 3D models Estimated local accuracy of models
  • Download Model 1
  • C-score=0.21 (Read more about C-score)
  • Estimated TM-score = 0.74±0.11
  • Estimated RMSD = 5.7±3.6Å

  • Download Model 2
  • C-score = -2.70

  • Download Model 3
  • C-score = -1.97

  • Download Model 4
  • C-score = -2.39

  • Download Model 5
  • C-score = -2.14




    •  Please cite following articles when you use the GPCR-I-TASSER server:
    J Zhang, J Yang, R Jang, Y Zhang. Hybrid structure modeling of G protein-coupled receptors in the human genome, submitted (2015).