GO:0003677	F	0.86	DNA binding
GO:0003700	F	0.84	transcription factor activity, sequence-specific DNA binding
GO:0044212	F	0.77	transcription regulatory region DNA binding
GO:0043565	F	0.67	sequence-specific DNA binding
GO:0003690	F	0.65	double-stranded DNA binding
GO:0001012	F	0.62	RNA polymerase II regulatory region DNA binding
GO:0000976	F	0.62	transcription regulatory region sequence-specific DNA binding
GO:0000977	F	0.61	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000981	F	0.53	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001228	F	0.41	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0000978	F	0.36	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0043169	F	0.32	cation binding
GO:0003705	F	0.28	transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
GO:0046983	F	0.27	protein dimerization activity
GO:0044877	F	0.27	macromolecular complex binding
GO:0003682	F	0.26	chromatin binding
GO:0046982	F	0.22	protein heterodimerization activity
GO:0003824	F	0.22	catalytic activity
GO:0070888	F	0.21	E-box binding
GO:0016838	F	0.18	carbon-oxygen lyase activity, acting on phosphates
GO:0046872	F	0.17	metal ion binding
GO:0000989	F	0.13	transcription factor activity, transcription factor binding
GO:0000982	F	0.12	transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
