D-I-TASSER O15169-D4

D-I-TASSER results for O15169-D4

[Click result.zip to download all results on this page]

Input Sequence in FASTA format

>O15169 (353 residues)
YRVPKEVRVEPQKFAEELIHRLEAVQRTREAEEKLEERLKRVRMEEEGEDGDPSSGPPGP
CHKLPPAPAWHHFPPRCVDMGCAGLRDAHEENPESILDEHVQRVLRTPGRQSPGPGHRSP
DSGHVAKMPVALGGAASGHGKHVPKSGAKLDAAGLHHHRHVHHHVHHSTARPKEQVEAEA
TRRAQSSFAWGLEPHSHGARSRGYSESVGAAPNASDGLAHSGKVGVACKRNAKKAESGKS
ASTEVPGASEDAEKNQKIMQWIIEGEKEISRHRRTGHGSSGTRKPQPHENSRPLSLEHPW
AGPQLRTSVQPSHLFIQDPTMPPHPAPNPLTQLEEARRRLEEEEKRASRAPSK

Predicted Secondary Structure

Sequence	20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| YRVPKEVRVEPQKFAEELIHRLEAVQRTREAEEKLEERLKRVRMEEEGEDGDPSSGPPGPCHKLPPAPAWHHFPPRCVDMGCAGLRDAHEENPESILDEHVQRVLRTPGRQSPGPGHRSPDSGHVAKMPVALGGAASGHGKHVPKSGAKLDAAGLHHHRHVHHHVHHSTARPKEQVEAEATRRAQSSFAWGLEPHSHGARSRGYSESVGAAPNASDGLAHSGKVGVACKRNAKKAESGKSASTEVPGASEDAEKNQKIMQWIIEGEKEISRHRRTGHGSSGTRKPQPHENSRPLSLEHPWAGPQLRTSVQPSHLFIQDPTMPPHPAPNPLTQLEEARRRLEEEEKRASRAPSK
Prediction	CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
Confidence	99986688899999999999999999999999999999986112112467765456654433578865444466422221123434567888678888752134248888999999999988888888888899899988765334766556776557665555567889866531011114666778999877788887888765567787765666667888877778887799863156788998655651225999998602013314788988888757788899887666788777788888999988768999999999981578999999875432111136899
	H:Helix; S:Strand; C:Coil

Predicted Solvent Accessibility

Sequence	20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| YRVPKEVRVEPQKFAEELIHRLEAVQRTREAEEKLEERLKRVRMEEEGEDGDPSSGPPGPCHKLPPAPAWHHFPPRCVDMGCAGLRDAHEENPESILDEHVQRVLRTPGRQSPGPGHRSPDSGHVAKMPVALGGAASGHGKHVPKSGAKLDAAGLHHHRHVHHHVHHSTARPKEQVEAEATRRAQSSFAWGLEPHSHGARSRGYSESVGAAPNASDGLAHSGKVGVACKRNAKKAESGKSASTEVPGASEDAEKNQKIMQWIIEGEKEISRHRRTGHGSSGTRKPQPHENSRPLSLEHPWAGPQLRTSVQPSHLFIQDPTMPPHPAPNPLTQLEEARRRLEEEEKRASRAPSK
Prediction	84335614251550054015205511553624630452055153555556454353344444534544344424432344425434626564234124611230042243443444453365443553344434334433422343344344553344332210213534445443545334403121233344342244243235535344454443443444443343444445414423453434466354433014113535543543444544544444445473445344543343553445331111032237135344242332044023315457546663578
	Values range from 0 (buried residue) to 8 (highly exposed residue)

Predicted Contact, Hydrogen and Distance Map Used in D-I-TASSER simulation

Contact Map

Distance Map

Hydrogen bond networks

D-I-TASSER simulation is guided by the consensus contact map (left figure), distance map (middle figure) and Hydrogen bond network (right figure) derived based on confidence scores of DeepPotential. In the contact, distance map and hydrogen bond networks, the axes mark the residue index along the sequence. For the contact map, each dot represents a residue pair with predicted contact, while for the distance map and hydrogen bond network, a color scale represents a distance of 1-20+ angstroms or a angle of 0-180 degree.

Top 10 threading templates used by D-I-TASSER

Rank

PDB
hit

ID1

ID2

Cov

Norm.
Zscore

Download
alignment

                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280                 300                 320                 340

                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |

SS
Seq

CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
YRVPKEVRVEPQKFAEELIHRLEAVQRTREAEEKLEERLKRVRMEEEGEDGDPSSGPPGPCHKLPPAPAWHHFPPRCVDMGCAGLRDAHEENPESILDEHVQRVLRTPGRQSPGPGHRSPDSGHVAKMPVALGGAASGHGKHVPKSGAKLDAAGLHHHRHVHHHVHHSTARPKEQVEAEATRRAQSSFAWGLEPHSHGARSRGYSESVGAAPNASDGLAHSGKVGVACKRNAKKAESGKSASTEVPGASEDAEKNQKIMQWIIEGEKEISRHRRTGHGSSGTRKPQPHENSRPLSLEHPWAGPQLRTSVQPSHLFIQDPTMPPHPAPNPLTQLEEARRRLEEEEKRASRAPSK

1xfdA

0.06

2.61

0.56

CEthreader

QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLETNEHVKKAINDRQMPKVEY

6gmhQ

0.07

2.74

0.68

EigenThreader

GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDVPPEILNNVGALHFRLGNLGEAKKYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHE

2akhY

0.08

0.06

2.51

0.64

FFAS-3D

-----ALGIMPYISASIIIQLLTVVESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLVT-----------GTMFLMWLGEQITERGIGN-------------------------GISIIIFAGIVAGLPPAIAHTIEQARQGDLHFLVLLLVAVLVFAVTFFVVFVERGQRRI--------------------VVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPLVFNPRETADNLKKSGAFVPGIRPGEQTAKYKVPFYFGGTSLLIVVVVIMDFMAQVQTLMMSSQYE

4btgA

0.13

0.12

4.29

1.12

SPARKS-K

SELLWEVNIDPVMYARLFFQYAQAVNQFTEYHQSTACNWRKLTAYITGSSNRAIKADAVG--KVPPTAILEQLRTL---------APSEHELFHHITTDFVCHVLSPLGFILPDAAYVYRVGRTAT-YPNFRASDLRRMLTALSSVDSKMLQ----------ATFKAKGALAPALISQHLANA--ATTAFERSRGNFDANARLWSPSTPKELDPSARLRNTNGIDQLRSNLALFIKQRGRAEVIFS---DEELSSTIIPWFIEAMSEVSPFKLRPINSYIGQTSAIDHMGQPSHVVYEDWQFAKEITAFTPQRFLDVEPGISLAPIGNTFAVSAFVKNRTAVYEAVSQRGTVN

5cwbA

0.18

0.05

1.47

0.41

CNFpred

-----------EEKARRVAEKVERLKRSGTSEDEIAEEVAREISEVIRTLKESGSSYEV----------ICECVARIVAEIVEALKGTSEDEIAEIVARVISEVIRTL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

6rw8A

0.04

0.03

1.43

0.67

DEthreader

--ARIKSRDLYIDNQVSVKTAEAIASQRRYSTWAGVELYPENYIDPT-RIGQ--M--FEDVANLQ-YSQTE-P------RIY--YW-RNV-----D--H------------QKCQHGQFAANAWGE-WKKIIPINVWQENI-------------LWLE-QKE-LKNESDGKID-IT--DY--I--LKLSHISPFNFNVVYEGMTINP-MTLS-----ILT---L---V-LSELDTTEYKVNNQ-FATDYYISPGNGH-----------------------------KNGSDILVELN-YDFNQVK--VDIEGY------------KSKDTSNVSIGPIDVPYVLFFYQFVMKN

6tf5A

0.05

2.44

0.97

MapAlign

--DDERTDPQVLDYLQAENAFTDAALKPQQALRETLYEEMVARGLEVSPDNQKLAVAEDFLSRRQYDIRFKNLSDDSWTDEVLENTSGSFEWANDSATVYYVRKHAKTLLPYQVYRHVVGTDPQLDELIYEEQDDTFYVGLEKTTSDRFILIHLSSTTTSEILLLDARADSTPQMFVPRRKDHEYGIDHYHQHFYIRSNKDGKNFGLYQSEQADEAQWQTLIAPFRDWLVVEERSEGLTQLRQIHWETELLRYGYSSMTTPTTLYELNLDSDERVMLKQQEVKNFTPENYRSERVWVKARDGVEVPVSLVYRHDSFARGTNYEDGKLFKKQNTFNDFIDVTEALIAQGYGDA-

6fmlG

0.11

3.86

0.86

MUSTER

KELGDELSYRQRAMYQSLRNQISIMDLDSATLMNLVMQFRKVCNHPDLFERADTSSPFFCGHFAETGSFLREGTNVALGYSTRSLVEYRLP---------RLIWCDGGRLDKPGPGNLVAGFRSKYLNHMMNIWTPENIRSSLEGIENFTWLRFVDTSLQEAYRASHTDVFARAVDLASKQNRLGHMQIVYDEPEDKKWTPVHALFQICERENPKAVAEITTEGVLVKYRELGLCRLEKAARPRASAPPIEVVCDSRSAVIERENIMFHPAMRKALFGPTPSEIKEASFGPRPVTLYPPRALLPAPDHDKQRFTNITVPSMARFVTDSGLAKLDELLRELKEGGH-------R

3cx5R

0.15

0.05

1.73

0.53

HHsearch

------PQS----F--TSIARIGDYILKSPVLSKLCVPVANQFINL----A----G-----Y--------KKLGLKFDDLI-------AEENPI--MQTAL-----------------------------------------------------------------------------------------------------------------------------------------------RRLPEDSYARAYRIIRAHQTE----------------LTHHL-------LP-RNEWIK--------------AQEDVPYLLP-----YILEAEAAAKEKDEDNIEVSK-

7ne4A

0.03

1.92

0.52

CEthreader

TRFEPGNEYAIYVRQPQAESEHWDTLIDGNQRAEQRAFYTLGGLEVSPDNQKLAVAEDFLSRRQYDIRFKNLSDDSWTDEVLENTSGSFEWANDSATVYYVRKHAKTLLPYQVYRHVVGTDPQLDELIYEEQDDTFYVGLEKTTSDRFILIHLSSTTTSEILLLDADRADSTPQMFVPRRKDHEYGIDHYHQHFYIRSNKDGKNFGLYQSEQADEAQWQTLIAPRIEVMLEGFSLFRDWLVVEERSEGLTQLRQIHWQSGEVKRIAFDDPTYTTWLAYNPEPETELLRYGYSSMTTPTTLYELNLDSDERVMLKQQEVKNFTPENYRSERVWVKARDGVEVPVSLVYRHDSFA

(a)	ID1 is the number of template residues identical to query divided by number of aligned residues.
(b)	ID2 is the number of template residues identical to query divided by query sequence length.
(c)	Cov is equal the number of aligned template residues divided by query sequence length.
(d)	Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold.
(e)	Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz).
(f)	Template residues identical to query sequence are highlighted in color.

Top 1 final models from D-I-TASSER

Click to view	Rank^a	Download	Estimated TM-score^b
	1	model1.pdb.gz	0.407

(a)

D-I-TASSER simulations generate a large ensemble of structural conformations, i.e. decoys. These decoys are clustered by SPICKER based on pairwise structure similarity to report up to five final models from the five largest clusters. Models are ranked in descending order of cluster size. If the simulations converge well, it is possible to have less than 5 models generated, which is usually an indication of good model quality.

(b)

The model confidence is quantitatified by estimated TM-score (eTM-score), calculated based on significance of threading template alignments, contact map satisfaction rate, mean absolute error between distance of model and distance of DeepPotential, and convergence of D-I-TASSER simulations. eTM-score is typically in the range of [0, 1], with higher eTM-score signifies higher model confidence.

Proteins with similar structure

Top 10 structural analogs in PDB (as identified by TM-align)

Rank	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov.	Download Alignment
1	6h02A	0.47	6.47	0.022	0.779	model1_6h02A.pdb.gz
2	1w6jA	0.46	6.65	0.052	0.779	model1_1w6jA.pdb.gz
3	3c68A	0.45	6.42	0.049	0.720	model1_3c68A.pdb.gz
4	1ut9A	0.44	5.78	0.053	0.660	model1_1ut9A.pdb.gz
5	5bv9A	0.44	6.44	0.054	0.720	model1_5bv9A.pdb.gz
6	5swiB	0.44	6.14	0.045	0.688	model1_5swiB.pdb.gz
7	4ui9A	0.43	6.62	0.080	0.720	model1_4ui9A.pdb.gz
8	6rutB	0.43	6.47	0.050	0.720	model1_6rutB.pdb.gz
9	3sqcA	0.43	6.66	0.033	0.725	model1_3sqcA.pdb.gz
10	4qjyA	0.43	6.44	0.028	0.703	model1_4qjyA.pdb.gz

(a)	Query structure is shown in cartoon, while the structural analog is displayed using backbone trace.
(b)	Ranking of proteins is based on TM-score of the structural alignment between the query structure and known structures in the PDB library.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov. represents the coverage of the alignment by TM-align and is equal to the number of structurally aligned residues divided by length of the query protein.

Predicted Gene Ontology (GO) Terms

Molecular Function (MF)

GO term	Cscore^GO	Name
GO:0005096	0.92	GTPase activator activity
GO:0070016	0.90	armadillo repeat domain binding
GO:0019901	0.90	protein kinase binding
GO:0008013	0.90	beta-catenin binding

Download full result of the above consensus prediction.

Click the graph to show a high resolution version.

(a)

Cscore^GO is the confidence score of predicted GO terms. Cscore^GO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.

(b)

The graph shows the predicted terms within the Gene Ontology hierachy for Molecular Function. Confidently predicted terms are color coded by Cscore^GO:

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Biological Process (BP)

GO term	Cscore^GO	Name
GO:0009966	1.00	regulation of signal transduction
GO:0080090	0.99	regulation of primary metabolic process
GO:0060255	0.99	regulation of macromolecule metabolic process
GO:0031323	0.99	regulation of cellular metabolic process
GO:0030111	0.97	regulation of Wnt signaling pathway
GO:0009987	0.97	cellular process
GO:0051171	0.96	regulation of nitrogen compound metabolic process
GO:0050896	0.96	response to stimulus
GO:0048519	0.96	negative regulation of biological process
GO:0044699	0.96	single-organism process
GO:0009889	0.96	regulation of biosynthetic process
GO:0007165	0.96	signal transduction
GO:0090244	0.95	Wnt signaling pathway involved in somitogenesis
GO:0090090	0.95	negative regulation of canonical Wnt signaling pathway
GO:0071407	0.95	cellular response to organic cyclic compound
GO:0044707	0.95	single-multicellular organism process
GO:0035412	0.95	regulation of catenin import into nucleus
GO:0006355	0.95	regulation of transcription, DNA-templated
GO:0048869	0.94	cellular developmental process
GO:0045596	0.94	negative regulation of cell differentiation
GO:0009950	0.93	dorsal/ventral axis specification
GO:0008219	0.93	cell death
GO:0048518	0.81	positive regulation of biological process
GO:0048522	0.80	positive regulation of cellular process
GO:0009893	0.80	positive regulation of metabolic process
GO:0031399	0.79	regulation of protein modification process
GO:0031325	0.79	positive regulation of cellular metabolic process
GO:0019220	0.79	regulation of phosphate metabolic process
GO:0010604	0.79	positive regulation of macromolecule metabolic process
GO:0001934	0.78	positive regulation of protein phosphorylation
GO:0080135	0.76	regulation of cellular response to stress
GO:0044767	0.75	single-organism developmental process
GO:0016043	0.74	cellular component organization
GO:0009967	0.74	positive regulation of signal transduction
GO:0009653	0.73	anatomical structure morphogenesis
GO:0006996	0.73	organelle organization
GO:0048856	0.72	anatomical structure development
GO:0046330	0.72	positive regulation of JNK cascade
GO:0009887	0.72	organ morphogenesis
GO:0003002	0.72	regionalization
GO:0051347	0.71	positive regulation of transferase activity
GO:0048646	0.71	anatomical structure formation involved in morphogenesis
GO:0045859	0.71	regulation of protein kinase activity
GO:0045860	0.70	positive regulation of protein kinase activity
GO:0009952	0.70	anterior/posterior pattern specification
GO:0048598	0.69	embryonic morphogenesis
GO:0045934	0.69	negative regulation of nucleobase-containing compound metabolic process
GO:0043506	0.69	regulation of JUN kinase activity
GO:0031327	0.69	negative regulation of cellular biosynthetic process
GO:0010605	0.69	negative regulation of macromolecule metabolic process
GO:0006357	0.69	regulation of transcription from RNA polymerase II promoter
GO:0000226	0.69	microtubule cytoskeleton organization
GO:0060823	0.68	canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation
GO:0055001	0.68	muscle cell development
GO:0048320	0.68	axial mesoderm formation
GO:0048048	0.68	embryonic eye morphogenesis
GO:0045599	0.68	negative regulation of fat cell differentiation
GO:0034244	0.68	negative regulation of transcription elongation from RNA polymerase II promoter
GO:0031122	0.68	cytoplasmic microtubule organization
GO:0030910	0.68	olfactory placode formation
GO:0021881	0.68	Wnt-activated signaling pathway involved in forebrain neuron fate commitment
GO:0021797	0.68	forebrain anterior/posterior pattern specification
GO:0007368	0.68	determination of left/right symmetry
GO:0007257	0.68	activation of JUN kinase activity
GO:0001743	0.68	optic placode formation
GO:0060272	0.64	embryonic skeletal joint morphogenesis

Download full result of the above consensus prediction.

Click the graph to show a high resolution version.

(a)

Cscore^GO is the confidence score of predicted GO terms. Cscore^GO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.

(b)

The graph shows the predicted terms within the Gene Ontology hierachy for Biological Process. Confidently predicted terms are color coded by Cscore^GO:

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Cellular Component (CC)

GO term	Cscore^GO	Name
GO:0044424	1.00	intracellular part
GO:0005737	0.99	cytoplasm
GO:0044444	0.96	cytoplasmic part
GO:0043227	0.96	membrane-bounded organelle
GO:0044446	0.95	intracellular organelle part
GO:0043231	0.95	intracellular membrane-bounded organelle
GO:0044430	0.94	cytoskeletal part
GO:0043232	0.94	intracellular non-membrane-bounded organelle
GO:0043234	0.93	protein complex
GO:0031410	0.93	cytoplasmic vesicle
GO:0030877	0.92	beta-catenin destruction complex
GO:0016023	0.92	cytoplasmic, membrane-bounded vesicle
GO:0014069	0.92	postsynaptic density
GO:0005938	0.92	cell cortex
GO:0005881	0.92	cytoplasmic microtubule
GO:0016020	0.91	membrane
GO:0005886	0.90	plasma membrane

Download full result of the above consensus prediction.

Click the graph to show a high resolution version.

(a)

Cscore^GO is the confidence score of predicted GO terms. Cscore^GO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.

(b)

The graph shows the predicted terms within the Gene Ontology hierachy for Cellular Component. Confidently predicted terms are color coded by Cscore^GO:

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Predicted Enzyme Commission (EC) Numbers

Top 5 enzyme homologs in PDB

Rank	Cscore^EC	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov.	EC Number	Predicted Active Site Residues
1	0.060	1h54B	0.428	5.95	0.050	0.663	2.4.1.8	90
2	0.060	1kktA	0.390	6.66	0.047	0.649	3.2.1.113	NA
3	0.060	1yiqA	0.422	6.58	0.043	0.694	1.1.99.-	NA
4	0.060	1lrwA	0.390	7.09	0.058	0.677	1.1.99.8	NA
5	0.060	1dl2A	0.414	6.65	0.057	0.697	3.2.1.113	NA

	Click on the radio buttons to visualize predicted active site residues.
(a)	Cscore^EC is the confidence score for the Enzyme Commission (EC) number prediction. Cscore^EC values range in between [0-1]; where a higher score indicates a more reliable EC number prediction.
(b)	TM-score is a measure of global structural similarity between query and template protein.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein.

Predicted Ligand Binding Sites

Template proteins with similar binding site:

No Binding sites was predicted

Click to view	Rank	Cscore^LB	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov.	BS-score	Lig. Name	Download Complex	Predicted binding site residues

	Click on the radio buttons to visualize predicted binding site and residues.
(a)	Cscore^LB is the confidence score of predicted binding site. Cscore^LB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction.
(b)	BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
(c)	TM-score is a measure of global structural similarity between query and template protein.
(d)	RMSD^a the RMSD between residues that are structurally aligned by TM-align.
(e)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(f)	Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein.

[Click result.zip to download all results on this page]

References:
1.	Wei Zheng, Qiqige Wuyun, Yang Li, Quancheng Liu, Xiaogen Zhou, Yiheng Zhu, P. Lydia Freddolino, Yang Zhang. Integrating deep learning potentials with I-TASSER for single- and multi-domain protein structure prediction. Submitted. 2023.