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# D-I-TASSER results for Q14393-D5

#### [Click result.zip to download all results on this page]

Input Sequence in FASTA format

>Q14393 (194 residues) LPCVPFSVAKSVKSLYLGRMFSGTPVIRLRFKRLQPTRLVAEFDFRTFDPEGILLFAGGH QDSTWIVLALRAGRLELQLRYNGVGRVTSSGPVINHGMWQTISVEELARNLVIKVNRDAV MKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQE TVKVNTRMQCFSVT

Predicted Secondary Structure

Sequence

20 40 60 80 100 120 140 160 180
| | | | | | | | |
LPCVPFSVAKSVKSLYLGRMFSGTPVIRLRFKRLQPTRLVAEFDFRTFDPEGILLFAGGHQDSTWIVLALRAGRLELQLRYNGVGRVTSSGPVINHGMWQTISVEELARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQETVKVNTRMQCFSVT
Prediction
CCCCCCCCCCCCCCSSSSCCCCCCSSSSSSSCCCCCCCSSSSSSSSSCCCCSSSSSSCCCCCCCSSSSSSSCCSSSSSSSCCCCSSSSSCCCSCCCCCCSSSSSSSSCCSSSSSSCCCCSSSSSCCCCCCCCCCCCCCCSSSSCCCCCCCCCCCCCCCCCSCSSSSSSSSCCSCCCHHHHHHHCCCCCCCSCCC
Confidence 99788866777751455022599426999926787751189999995899958999589999728999998998999998799249997474127996189999996999999998942278861565455665665650899152786555533578982168899999691222123355337888703059
H:Helix; S:Strand; C:Coil
Predicted Solvent Accessibility

Sequence | 20 40 60 80 100 120 140 160 180 | | | | | | | | | LPCVPFSVAKSVKSLYLGRMFSGTPVIRLRFKRLQPTRLVAEFDFRTFDPEGILLFAGGHQDSTWIVLALRAGRLELQLRYNGVGRVTSSGPVINHGMWQTISVEELARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQETVKVNTRMQCFSVT
Prediction | 64134243664141232042242412020305426454230102020434300000014475310000104523020103144333313354403333002010224554020202444344243425244374341523000000044455244423540303023031345434324532655544431247
| Values range from 0 (buried residue) to 8 (highly exposed residue)

Predicted Contact, Hydrogen and Distance Map Used in D-I-TASSER simulation

Contact Map | Distance Map | Hydrogen bond networks

D-I-TASSER simulation is guided by the consensus contact map (left figure), distance map (middle figure) and Hydrogen bond network (right figure) derived based on confidence scores of DeepPotential. In the contact, distance map and hydrogen bond networks, the axes mark the residue index along the sequence. For the contact map, each dot represents a residue pair with predicted contact, while for the distance map and hydrogen bond network, a color scale represents a distance of 1-20+ angstroms or a angle of 0-180 degree.

Top 10 threading templates used by D-I-TASSER

Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment |  | 20 40 60 80 100 120 140 160 180 | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCSSSSCCCCCCSSSSSSSCCCCCCCSSSSSSSSSCCCCSSSSSSCCCCCCCSSSSSSSCCSSSSSSSCCCCSSSSSCCCSCCCCCCSSSSSSSSCCSSSSSSCCCCSSSSSCCCCCCCCCCCCCCCSSSSCCCCCCCCCCCCCCCCCSCSSSSSSSSCCSCCCHHHHHHHCCCCCCCSCCC LPCVPFSVAKSVKSLYLGRMFSGTPVIRLRFKRLQPTRLVAEFDFRTFDPEGILLFAGGHQDSTWIVLALRAGRLELQLRYNGVGRVTSSGPVINHGMWQTISVEELARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQETVKVNTRMQCFSVT
1 | 1dykA | 0.17 | 0.16 | 5.28 | 1.33 | DEthreader |  | KQFGTEAESNGNDGAESGTYFDG TGFAKAVGGFKVGLDLLVE FEF R TTRPTGVL LGVSSQ-KMDGMGIEMIDEKLMFHVDNGAGRFTAIYDAHMCNGQWHKVTAKKIKNRLELVVDGNQ-VDAQSPNASTSA--DT-NDPVFV G GFPGGLNQFGLTTNIRFRG CIR SLKLTGKPLEV--NFAKALELRGVQCPT
2 | 1h30A1 | 0.87 | 0.77 | 21.76 | 1.83 | SPARKS-K |  | ------------VAKSVKSLYLGRP V I R L R F K R L Q P T R L V A E F D F R T F D P E G I L L F A G G H Q D S T W I V L A L R A G R L E L Q L R Y N G V G R V T S S G P V I N H G M W Q T I S V E E L A R N L V I K V N R D A V M K I A V A G D L F Q P E R G L Y H L N L T V G G I P F H E K D L V Q P I N P R L D G C M R S W N W LTVKVNTRMQCFSV----------
3 | 2wjsA | 0.14 | 0.13 | 4.37 | 0.68 | MapAlign |  | ---------------EGTIQFDGEGYALVSRIRWYPNISTVMFKF R T FSSSALLMYLATRDLKDFMSVELSDGHVKVSYDLGSGMTSVVSNQNHNDGKWKAFTLSRIQKQANISIVDQEEVATSSSGNNF-GLDLKADDKIYFG GLPTLRNLRPEVNVKKYSG CLKDIEISRT-PYNILSSPDYVGVTKG----
4 | 3sh4A | 0.18 | 0.16 | 5.37 | 0.54 | CEthreader |  | -----------DAPGQYGAYFHDDGFLAFPGHVFSRVPETIELEVR TSTASGLL LWQGVGQGKDFISLGLQDGHLVFRYQLGSGEARLVSEDPI NDGEWHRVTALREGRRGSIQVDGEELVSGRSPGPNVAV---NAKGSVYIG GAPDVATLTGGRFSSGITG CVKNLVLHSAQPLDLQHRAQAGATRPCPS--
5 | 1h30A | 0.96 | 0.89 | 24.87 | 1.45 | MUSTER |  | L P C V P F S V A K-----SVKSLYLGRP V I R L R F K R L Q P T R L V A E F D F R T F D P E G I L L F A G G H Q D S T W I V L A L R A G R L E L Q L R Y N G V G R V T S S G P V I N H G M W Q T I S V E E L A R N L V I K V N R D A V M K I A V A G D L F Q P E R G L Y H L N L T V G G I P F H E K D L V Q P I N P R L D G C M R S W N W L---------T V K V N T R M Q C F S V T
6 | 2jd4A | 0.18 | 0.18 | 5.70 | 1.71 | HHsearch |  | ---APLAQPELCAVDAGAHQFGLNSHLVLPLQQSDRKR LQVQLSIR T FASSGLIYYVAHQNQMDYATLQLQEG R LHFMFDLGKGRTKVSHPALLSDGKWHTVKTEYIKRKAFMTVDGQESPSVTVVGKATTLDV---ERKLYLG GLPSHYRARIGTITHSIPACIGEIM-VN GQQLDKDRPLSASAVDRCYVVA
7 | 1h30A1 | 0.89 | 0.78 | 22.03 | 2.08 | FFAS-3D |  | --------------KSVKSLYLGRP V I R L R F K R L Q P T R L V A E F D F R T F D P E G I L L F A G G H Q D S T W I V L A L R A G R L E L Q L R Y N G V G R V T S S G P V I N H G M W Q T I S V E E L A R N L V I K V N R D A V M K I A V A G D L F Q P E R G L Y H L N L T V G G I P F H E K D L V Q P I N P R L D G C M R S W N W-LTVKVNTRM--------Q C F S V-
8 | 5mc9A1 | 0.12 | 0.12 | 4.33 | 1.03 | EigenThreader |  | IKLLISRARKQAASIKVAVSADRDCIRAYQPQTSSTNYNTLILNVKTQEPDNLLFYLGSSSSSDFLAVEMRRGKVAFLWDLGSSTRLEFPEVSI NNNRWHSIYITRFGNMGSLSVASPPVRTSKSPGPS-KVLDINNSTLMFV G GLGGQIKKSPAVKVTHFKG C MGEAFLNGKSIGLWNYIEREG-KCNGCFGS
9 | 2wjsA | 0.15 | 0.13 | 4.52 | 2.42 | CNFpred |  | -----------------TIQFDGEGYALVSRPRWYPNISTVMFKF R T FSSSALLMYLATRDLKDFMSVELSDGHVKVSYDLGSGMTSVVSNQNHNDGKWKAFTLSRIQKQANISIVDEENVATSSSGNNFGLDL-KADDKIYFG GLPTLRNLRPEVNVKKYSG CLKDIEIS-RTPYNILSSPDYVGVTGCSLEN
10 | 1q56A | 0.18 | 0.16 | 5.38 | 1.33 | DEthreader |  | --------EKAAGDA-EAIAFDGRTYMEYHNAVKALQSNHFELSIKTEATQGLILWSGKLERSDYIAL AIVDGFVQMMYDLGSKPVVLRSTVPI NTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQL--DTD-GALWLG GMERLSVAHKLPAYTGFIG CIRDVIVD-RQELHLVEDAL-NNPTILHCSK
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues.
(b) | ID2 is the number of template residues identical to query divided by query sequence length.
(c) | Cov is equal the number of aligned template residues divided by query sequence length.
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold.
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz).
(f) | Template residues identical to query sequence are highlighted in color.

Top 1 final models from D-I-TASSER

Click to view | Ranka | Download | Estimated TM-scoreb
| 1 | model1.pdb.gz | 0.8164
(a) | D-I-TASSER simulations generate a large ensemble of structural conformations, i.e. decoys. These decoys are clustered by SPICKER based on pairwise structure similarity to report up to five final models from the five largest clusters. Models are ranked in descending order of cluster size. If the simulations converge well, it is possible to have less than 5 models generated, which is usually an indication of good model quality.
(b) | The model confidence is quantitatified by estimated TM-score (eTM-score), calculated based on significance of threading template alignments, contact map satisfaction rate, mean absolute error between distance of model and distance of DeepPotential, and convergence of D-I-TASSER simulations. eTM-score is typically in the range of [0, 1], with higher eTM-score signifies higher model confidence.

Proteins with similar structure

| Top 10 structural analogs in PDB (as identified by TM-align)
Click to view | Rank | PDB Hit | TM-score | RMSDa | IDENa | Cov. | Download Alignment
--- | --- | --- | --- | --- | --- | --- | ---
| 1 | 2jd4A | 0.83 | 1.95 | 0.173 | 0.923 | model1_2jd4A.pdb.gz
| 2 | 1dykA | 0.83 | 2.64 | 0.170 | 0.969 | model1_1dykA.pdb.gz
| 3 | 2wjsA | 0.82 | 2.14 | 0.130 | 0.917 | model1_2wjsA.pdb.gz
| 4 | 5mc9A | 0.82 | 2.27 | 0.153 | 0.917 | model1_5mc9A.pdb.gz
| 5 | 3v64A | 0.81 | 2.07 | 0.176 | 0.907 | model1_3v64A.pdb.gz
| 6 | 1q56A | 0.81 | 2.20 | 0.170 | 0.917 | model1_1q56A.pdb.gz
| 7 | 3poyA1 | 0.80 | 2.40 | 0.175 | 0.912 | model1_3poyA1.pdb.gz
| 8 | 3pveA | 0.79 | 2.22 | 0.198 | 0.887 | model1_3pveA.pdb.gz
| 9 | 3asiA | 0.79 | 2.18 | 0.157 | 0.887 | model1_3asiA.pdb.gz
| 10 | 2r16A | 0.78 | 2.08 | 0.179 | 0.866 | model1_2r16A.pdb.gz
(a) | Query structure is shown in cartoon, while the structural analog is displayed using backbone trace.
(b) | Ranking of proteins is based on TM-score of the structural alignment between the query structure and known structures in the PDB library.
(c) | RMSDa is the RMSD between residues that are structurally aligned by TM-align.
(d) | IDENa is the percentage sequence identity in the structurally aligned region.
(e) | Cov. represents the coverage of the alignment by TM-align and is equal to the number of structurally aligned residues divided by length of the query protein.

Predicted Gene Ontology (GO) Terms

Molecular Function (MF)
GO term | CscoreGO | Name
GO:0008289 | 0.79 | lipid binding
GO:0030234 | 0.77 | enzyme regulator activity
GO:0005102 | 0.76 | receptor binding
GO:0004866 | 0.76 | endopeptidase inhibitor activity
GO:0060090 | 0.71 | binding, bridging
GO:0043027 | 0.71 | cysteine-type endopeptidase inhibitor activity involved in apoptotic process
GO:0030296 | 0.71 | protein tyrosine kinase activator activity
GO:0005245 | 0.71 | voltage-gated calcium channel activity
GO:0001786 | 0.71 | phosphatidylserine binding
Download full result of the above consensus prediction.

| Click the graph to show a high resolution version.
(a) | CscoreGO is the confidence score of predicted GO terms. CscoreGO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.
(b) | The graph shows the predicted terms within the Gene Ontology hierachy for Molecular Function. Confidently predicted terms are color coded by CscoreGO:
[0.4,0.5) | [0.5,0.6) | [0.6,0.7) | [0.7,0.8) | [0.8,0.9) | [0.9,1.0]

Biological Process (BP)

GO term | CscoreGO | Name
GO:0044699 | 0.98 | single-organism process
GO:0009987 | 0.90 | cellular process
GO:0044763 | 0.88 | single-organism cellular process
GO:0065007 | 0.86 | biological regulation
GO:0050789 | 0.84 | regulation of biological process
GO:0050794 | 0.79 | regulation of cellular process
GO:0016043 | 0.79 | cellular component organization
GO:0006928 | 0.73 | movement of cell or subcellular component
GO:0050896 | 0.72 | response to stimulus
GO:0048518 | 0.72 | positive regulation of biological process
GO:0040011 | 0.72 | locomotion
GO:0032501 | 0.72 | multicellular organismal process
GO:0016477 | 0.71 | cell migration
GO:0019222 | 0.70 | regulation of metabolic process
GO:0080090 | 0.69 | regulation of primary metabolic process
GO:0048522 | 0.69 | positive regulation of cellular process
GO:0060255 | 0.68 | regulation of macromolecule metabolic process
GO:0051179 | 0.68 | localization
GO:0031323 | 0.67 | regulation of cellular metabolic process
GO:0071704 | 0.66 | organic substance metabolic process
GO:0051246 | 0.66 | regulation of protein metabolic process
GO:0042221 | 0.66 | response to chemical
GO:0031325 | 0.66 | positive regulation of cellular metabolic process
GO:0030198 | 0.66 | extracellular matrix organization
GO:0051641 | 0.65 | cellular localization
GO:0051239 | 0.65 | regulation of multicellular organismal process
GO:0048519 | 0.65 | negative regulation of biological process
GO:0044238 | 0.65 | primary metabolic process
GO:0044237 | 0.65 | cellular metabolic process
GO:0010604 | 0.65 | positive regulation of macromolecule metabolic process
GO:0010033 | 0.65 | response to organic substance
GO:0065009 | 0.64 | regulation of molecular function
GO:0048583 | 0.64 | regulation of response to stimulus
GO:0043170 | 0.64 | macromolecule metabolic process
GO:0032268 | 0.64 | regulation of cellular protein metabolic process
GO:1902578 | 0.63 | single-organism localization
GO:0065008 | 0.63 | regulation of biological quality
GO:0051336 | 0.63 | regulation of hydrolase activity
GO:0044802 | 0.63 | single-organism membrane organization
GO:0044260 | 0.63 | cellular macromolecule metabolic process
GO:0043085 | 0.63 | positive regulation of catalytic activity
GO:0032270 | 0.63 | positive regulation of cellular protein metabolic process
GO:0030162 | 0.63 | regulation of proteolysis
GO:0010468 | 0.63 | regulation of gene expression
GO:0008104 | 0.63 | protein localization
GO:0007165 | 0.63 | signal transduction
GO:0003008 | 0.63 | system process
GO:0051234 | 0.62 | establishment of localization
GO:0051128 | 0.62 | regulation of cellular component organization
GO:0044267 | 0.62 | cellular protein metabolic process
GO:0034613 | 0.62 | cellular protein localization
GO:2000026 | 0.61 | regulation of multicellular organismal development
GO:1901700 | 0.61 | response to oxygen-containing compound
GO:0051704 | 0.61 | multi-organism process
GO:0051241 | 0.61 | negative regulation of multicellular organismal process
GO:0051240 | 0.61 | positive regulation of multicellular organismal process
GO:0051130 | 0.61 | positive regulation of cellular component organization
GO:0048523 | 0.61 | negative regulation of cellular process
GO:0042127 | 0.61 | regulation of cell proliferation
GO:0032879 | 0.61 | regulation of localization
GO:0022610 | 0.61 | biological adhesion
GO:0022607 | 0.61 | cellular component assembly
GO:0006810 | 0.61 | transport
GO:0006464 | 0.61 | cellular protein modification process
GO:0002682 | 0.61 | regulation of immune system process
GO:0002376 | 0.61 | immune system process
GO:1902580 | 0.60 | single-organism cellular localization
GO:0052548 | 0.60 | regulation of endopeptidase activity
GO:0051649 | 0.60 | establishment of localization in cell
GO:0044765 | 0.60 | single-organism transport
GO:0023051 | 0.60 | regulation of signaling
GO:0019220 | 0.60 | regulation of phosphate metabolic process
GO:0018193 | 0.60 | peptidyl-amino acid modification
GO:0016192 | 0.60 | vesicle-mediated transport
GO:0010646 | 0.60 | regulation of cell communication
GO:0010628 | 0.60 | positive regulation of gene expression
GO:0009605 | 0.60 | response to external stimulus
GO:0006355 | 0.60 | regulation of transcription, DNA-templated
GO:0072657 | 0.59 | protein localization to membrane
GO:0051094 | 0.59 | positive regulation of developmental process
GO:0051093 | 0.59 | negative regulation of developmental process
GO:0050900 | 0.59 | leukocyte migration
GO:0050766 | 0.59 | positive regulation of phagocytosis
GO:0048584 | 0.59 | positive regulation of response to stimulus
GO:0046907 | 0.59 | intracellular transport
GO:0009966 | 0.59 | regulation of signal transduction
GO:0001934 | 0.59 | positive regulation of protein phosphorylation
GO:1902533 | 0.58 | positive regulation of intracellular signal transduction
GO:0060341 | 0.58 | regulation of cellular localization
GO:0051716 | 0.58 | cellular response to stimulus
GO:0050731 | 0.58 | positive regulation of peptidyl-tyrosine phosphorylation
GO:0048585 | 0.58 | negative regulation of response to stimulus
GO:0045595 | 0.58 | regulation of cell differentiation
GO:0007154 | 0.58 | cell communication
GO:1903828 | 0.57 | negative regulation of cellular protein localization
GO:1903530 | 0.57 | regulation of secretion by cell
GO:1901654 | 0.57 | response to ketone
GO:0071345 | 0.57 | cellular response to cytokine stimulus
GO:0070167 | 0.57 | regulation of biomineral tissue development
GO:0051249 | 0.57 | regulation of lymphocyte activation
GO:0045861 | 0.57 | negative regulation of proteolysis
GO:0044092 | 0.57 | negative regulation of molecular function
GO:0043066 | 0.57 | negative regulation of apoptotic process
GO:0035556 | 0.57 | intracellular signal transduction
GO:0032675 | 0.57 | regulation of interleukin-6 production
GO:0032386 | 0.57 | regulation of intracellular transport
GO:0031669 | 0.57 | cellular response to nutrient levels
GO:0018209 | 0.57 | peptidyl-serine modification
GO:0016032 | 0.57 | viral process
GO:0015031 | 0.57 | protein transport
GO:0010629 | 0.57 | negative regulation of gene expression
GO:0009968 | 0.57 | negative regulation of signal transduction
GO:0008284 | 0.57 | positive regulation of cell proliferation
GO:0006468 | 0.57 | protein phosphorylation
GO:0002684 | 0.57 | positive regulation of immune system process
GO:2000669 | 0.56 | negative regulation of dendritic cell apoptotic process
GO:2000533 | 0.56 | negative regulation of renal albumin absorption
GO:2000352 | 0.56 | negative regulation of endothelial cell apoptotic process
GO:2000270 | 0.56 | negative regulation of fibroblast apoptotic process
GO:1900165 | 0.56 | negative regulation of interleukin-6 secretion
GO:1900142 | 0.56 | negative regulation of oligodendrocyte apoptotic process
GO:0097241 | 0.56 | hematopoietic stem cell migration to bone marrow
GO:0085029 | 0.56 | extracellular matrix assembly
GO:0072661 | 0.56 | protein targeting to plasma membrane
GO:0071333 | 0.56 | cellular response to glucose stimulus
GO:0071307 | 0.56 | cellular response to vitamin K
GO:0070168 | 0.56 | negative regulation of biomineral tissue development
GO:0061098 | 0.56 | positive regulation of protein tyrosine kinase activity
GO:0051897 | 0.56 | positive regulation of protein kinase B signaling
GO:0050711 | 0.56 | negative regulation of interleukin-1 secretion
GO:0048146 | 0.56 | positive regulation of fibroblast proliferation
GO:0046827 | 0.56 | positive regulation of protein export from nucleus
GO:0046813 | 0.56 | receptor-mediated virion attachment to host cell
GO:0046718 | 0.56 | viral entry into host cell
GO:0045892 | 0.56 | negative regulation of transcription, DNA-templated
GO:0043491 | 0.56 | protein kinase B signaling
GO:0043433 | 0.56 | negative regulation of sequence-specific DNA binding transcription factor activity
GO:0043277 | 0.56 | apoptotic cell clearance
GO:0043154 | 0.56 | negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0035754 | 0.56 | B cell chemotaxis
GO:0035690 | 0.56 | cellular response to drug
GO:0035457 | 0.56 | cellular response to interferon-alpha
GO:0033159 | 0.56 | negative regulation of protein import into nucleus, translocation
GO:0033138 | 0.56 | positive regulation of peptidyl-serine phosphorylation
GO:0032825 | 0.56 | positive regulation of natural killer cell differentiation
GO:0032720 | 0.56 | negative regulation of tumor necrosis factor production
GO:0032689 | 0.56 | negative regulation of interferon-gamma production
GO:0032148 | 0.56 | activation of protein kinase B activity
GO:0032008 | 0.56 | positive regulation of TOR signaling
GO:0019079 | 0.56 | viral genome replication
GO:0019064 | 0.56 | fusion of virus membrane with host plasma membrane
GO:0018105 | 0.56 | peptidyl-serine phosphorylation
GO:0010804 | 0.56 | negative regulation of tumor necrosis factor-mediated signaling pathway
GO:0003104 | 0.56 | positive regulation of glomerular filtration
GO:0001961 | 0.56 | positive regulation of cytokine-mediated signaling pathway

Download full result of the above consensus prediction.

| Click the graph to show a high resolution version.
(a) | CscoreGO is the confidence score of predicted GO terms. CscoreGO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.
(b) | The graph shows the predicted terms within the Gene Ontology hierachy for Biological Process. Confidently predicted terms are color coded by CscoreGO:
[0.4,0.5) | [0.5,0.6) | [0.6,0.7) | [0.7,0.8) | [0.8,0.9) | [0.9,1.0]

Cellular Component (CC)

GO term | CscoreGO | Name
GO:0044421 | 0.90 | extracellular region part
GO:0044464 | 0.88 | cell part
GO:0044424 | 0.78 | intracellular part
GO:0005615 | 0.76 | extracellular space
GO:0005737 | 0.61 | cytoplasm

Download full result of the above consensus prediction.

| Click the graph to show a high resolution version.
(a) | CscoreGO is the confidence score of predicted GO terms. CscoreGO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.
(b) | The graph shows the predicted terms within the Gene Ontology hierachy for Cellular Component. Confidently predicted terms are color coded by CscoreGO:
[0.4,0.5) | [0.5,0.6) | [0.6,0.7) | [0.7,0.8) | [0.8,0.9) | [0.9,1.0]

Predicted Enzyme Commission (EC) Numbers

| Top 5 enzyme homologs in PDB
Click to view | Rank | CscoreEC | PDB Hit | TM-score | RMSDa | IDENa | Cov. | EC Number | Predicted Active Site Residues
--- | --- | --- | --- | --- | --- | --- | --- | --- | ---
| 1 | 0.234 | 1lclA | 0.518 | 3.29 | 0.107 | 0.670 | 3.1.1.5 | NA
| 2 | 0.067 | 1gbgA | 0.597 | 4.03 | 0.098 | 0.809 | 3.2.1.73 | NA
| 3 | 0.067 | 1byhA | 0.594 | 4.13 | 0.055 | 0.814 | 3.2.1.73 | NA
| 4 | 0.067 | 2ayhA | 0.596 | 4.02 | 0.079 | 0.809 | 3.2.1.73 | NA
| 5 | 0.066 | 2vy0A | 0.635 | 3.73 | 0.054 | 0.825 | 3.2.1.39 | 76
| Click on the radio buttons to visualize predicted active site residues.
(a) | CscoreEC is the confidence score for the Enzyme Commission (EC) number prediction. CscoreEC values range in between [0-1]; where a higher score indicates a more reliable EC number prediction.
(b) | TM-score is a measure of global structural similarity between query and template protein.
(c) | RMSDa is the RMSD between residues that are structurally aligned by TM-align.
(d) | IDENa is the percentage sequence identity in the structurally aligned region.
(e) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein.

Predicted Ligand Binding Sites

| Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues
--- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ---
| 1 | 0.16 | 1d2sA | 0.716 | 2.85 | 0.235 | 0.851 | 1.49 | CA | complex1.pdb.gz | 49,51,160
| 2 | 0.04 | 2wjsA | 0.824 | 2.14 | 0.130 | 0.917 | 0.70 | CA | complex2.pdb.gz | 54,142,144
| 3 | 0.03 | 3mw2A | 0.736 | 2.29 | 0.135 | 0.840 | 0.71 | UUU | complex3.pdb.gz | 51,52,71,75,77
| 4 | 0.03 | 3d5o2 | 0.734 | 3.06 | 0.080 | 0.892 | 0.69 | III | complex4.pdb.gz | 89,90,107,110,112,119,120,121,122,123,124
| Click on the radio buttons to visualize predicted binding site and residues.
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction.
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
(c) | TM-score is a measure of global structural similarity between query and template protein.
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align.
(e) | IDENa is the percentage sequence identity in the structurally aligned region.
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein.

#### [Click result.zip to download all results on this page]

References:
1. | Wei Zheng, Qiqige Wuyun, Yang Li, Quancheng Liu, Xiaogen Zhou, Yiheng Zhu, P. Lydia Freddolino, Yang Zhang. Integrating deep learning potentials with I-TASSER for single- and multi-domain protein structure prediction. Submitted. 2023.