D-I-TASSER Q6UW02-D1

D-I-TASSER results for Q6UW02-D1

[Click result.zip to download all results on this page]

Input Sequence in FASTA format

>Q6UW02 (462 residues)
MLDFAIFAVTFLLALVGAVLYLYPASRQAAGIPGITPTEEKDGNLPDIVNSGSLHEFLVN
LHERYGPVVSFWFGRRLVVSLGTVDVLKQHINPNKTSDPFETMLKSLLRYQSGGGSVSEN
HMRKKLYENGVTDSLKSNFALLLKLSEELLDKWLSYPETQHVPLSQHMLGFAMKSVTQMV
MGSTFEDDQEVIRFQKNHGTVWSEIGKGFLDGSLDKNMTRKKQYEDALMQLESVLRNIIK
ERKGRNFSQHIFIDSLVQGNLNDQQILEDSMIFSLASCIITAKLCTWAICFLTTSEEVQK
KLYEEINQVFGNGPVTPEKIEQLRYCQHVLCETVRTAKLTPVSAQLQDIEGKIDRFIIPR
ETLVLYALGVVLQDPNTWPSPHKFDPDRFDDELVMKTFSSLGFSGTQECPELRFAYMVTT
VLLSVLVKRLHLLSVEGQVIETKYELVTSSREEAWITVSKRY

Predicted Secondary Structure

Sequence	20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| MLDFAIFAVTFLLALVGAVLYLYPASRQAAGIPGITPTEEKDGNLPDIVNSGSLHEFLVNLHERYGPVVSFWFGRRLVVSLGTVDVLKQHINPNKTSDPFETMLKSLLRYQSGGGSVSENHMRKKLYENGVTDSLKSNFALLLKLSEELLDKWLSYPETQHVPLSQHMLGFAMKSVTQMVMGSTFEDDQEVIRFQKNHGTVWSEIGKGFLDGSLDKNMTRKKQYEDALMQLESVLRNIIKERKGRNFSQHIFIDSLVQGNLNDQQILEDSMIFSLASCIITAKLCTWAICFLTTSEEVQKKLYEEINQVFGNGPVTPEKIEQLRYCQHVLCETVRTAKLTPVSAQLQDIEGKIDRFIIPRETLVLYALGVVLQDPNTWPSPHKFDPDRFDDELVMKTFSSLGFSGTQECPELRFAYMVTTVLLSVLVKRLHLLSVEGQVIETKYELVTSSREEAWITVSKRY
Prediction	CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCSCCHHHHCCCCCHHHHHHHHHHHHCCSSSSSSCCSSSSSSCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCSSCCCSSSCCSSSCCCCSSSSCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCSSSCCCCCCCCCCCCSSSCCCCCSSSSSSSCC
Confidence	846999999999999999999986430005999699999734247884577738999999999969989999779559998899999999703133567750255676532477534258899987178778999999999999999999999985699956238999999999999876386327741799999999999999853114425666313105799999999999999999998339753419999970699999999999999963545678999999999986989999999999999498998988861595899999998821888455462236757989999899929998045642697668898885987789986799862328999876936999999999999999841188828997456513547704898389999588
	H:Helix; S:Strand; C:Coil

Predicted Solvent Accessibility

Sequence	20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| MLDFAIFAVTFLLALVGAVLYLYPASRQAAGIPGITPTEEKDGNLPDIVNSGSLHEFLVNLHERYGPVVSFWFGRRLVVSLGTVDVLKQHINPNKTSDPFETMLKSLLRYQSGGGSVSENHMRKKLYENGVTDSLKSNFALLLKLSEELLDKWLSYPETQHVPLSQHMLGFAMKSVTQMVMGSTFEDDQEVIRFQKNHGTVWSEIGKGFLDGSLDKNMTRKKQYEDALMQLESVLRNIIKERKGRNFSQHIFIDSLVQGNLNDQQILEDSMIFSLASCIITAKLCTWAICFLTTSEEVQKKLYEEINQVFGNGPVTPEKIEQLRYCQHVLCETVRTAKLTPVSAQLQDIEGKIDRFIIPRETLVLYALGVVLQDPNTWPSPHKFDPDRFDDELVMKTFSSLGFSGTQECPELRFAYMVTTVLLSVLVKRLHLLSVEGQVIETKYELVTSSREEAWITVSKRY
Prediction	410120322022222222222222331444701524211000000120155630140024007311200001013200000010500230034433413643203300221220001203410110122002520351052035103400520373376330302420130001000000002206457302401520330032023200330023004233304400520250054005304756554300000015250337202100100000211000000000010103125005201500361077550226206624204000200010100000001303450504604013402000000000012623650441302112674434402102734140214133010001000000012050422773615130100021544020203337
	Values range from 0 (buried residue) to 8 (highly exposed residue)

Predicted Contact, Hydrogen and Distance Map Used in D-I-TASSER simulation

Contact Map

Distance Map

Hydrogen bond networks

D-I-TASSER simulation is guided by the consensus contact map (left figure), distance map (middle figure) and Hydrogen bond network (right figure) derived based on confidence scores of DeepPotential. In the contact, distance map and hydrogen bond networks, the axes mark the residue index along the sequence. For the contact map, each dot represents a residue pair with predicted contact, while for the distance map and hydrogen bond network, a color scale represents a distance of 1-20+ angstroms or a angle of 0-180 degree.

Top 10 threading templates used by D-I-TASSER

Rank

PDB
hit

ID1

ID2

Cov

Norm.
Zscore

Download
alignment

                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280                 300                 320                 340                 360                 380                 400                 420                 440                 460

                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |

SS
Seq

CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCSCCHHHHCCCCCHHHHHHHHHHHHCCSSSSSSCCSSSSSSCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCSSCCCSSSCCSSSCCCCSSSSCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCSSSCCCCCCCCCCCCSSSCCCCCSSSSSSSCC
MLDFAIFAVTFLLALVGAVLYLYPASRQAAGIPGITPTEEKDGNLPDIVNSGSLHEFLVNLHERYGPVVSFWFGRRLVVSLGTVDVLKQHINPNKTSDPFETMLKSLLRYQSGGGSVSENHMRKKLYENGVTDSLKSNFALLLKLSEELLDKWLSYPETQHVPLSQHMLGFAMKSVTQMVMGSTFEDDQEVIRFQKNHGTVWSEIGKGFLDGSLDKNMTRKKQYEDALMQLESVLRNIIKERKGRNFSQHIFIDSLVQGNLNDQQILEDSMIFSLASCIITAKLCTWAICFLTTSEEVQKKLYEEINQVFGNGPVTPEKIEQLRYCQHVLCETVRTAKLTPVSAQLQDIEGKIDRFIIPRETLVLYALGVVLQDPNTWPSPHKFDPDRFDDELVMKTFSSLGFSGTQECPELRFAYMVTTVLLSVLVKRLHLLSVEGQVIETKYELVTSSREEAWITVSKRY

5t6qA

0.16

0.15

4.98

1.50

DEthreader

---------------LL-LLL-RQRLARAMDSFPGPPTHWLFGHALEIQK-TGSLDKVVTWTQQFPYAHPLWVGFIGFLNIYEPDYAKAVYSRGDPKAPVYDFFLQWIGKGLLVLDGPKWFQHRKLLTPGFHDVLKPYVAIFADSTRIMLEKWEKKCEGKSFDIFSDVGHMALDTLMKCTFGKG----HRDSSYYVAVSELTLLMQQRIDSFQYNIYWTHGRRFLRACRAAHDHTDRVIRQRKAALERELDFLDILLVGQLSDTDLRAEVDTFMFEGHDTTTSGISWFLYCMALYPEHQQRCREEVREILGDDSFQWEDLAKMTYLTMCMKECFRLYPPVPQVYRQLSKPVSFDGRSLPAGSLISLHIYALHRNSDVWPDPEVFDPLRFSPSSGRHPYAFIPSAGPRNCIGQQFAMNEMKVVTALCLLRFEFSVDPLRLPIKLPQLVLRSKNGIHLYLKPLG

5t6qA

0.16

5.17

2.10

SPARKS-K

----------GFLKLLRLLLRRQRLARAMDSFPGPPTHW-LFGHALEIQ-KTGSLDKVVTWTQQFPYAHPLWVGFIGFLNIYEPDYAKAVYSRGDPKAPVYDFFLQWIGKGLLVLDGPKWFQHRKLLTPGFYDVLKPYVAIFADSTRIMLEKWEKKCEGKSFDIFSDVGHMALDTLMKCTFGKG----HRDSSYYVAVSELTLLMQQRIDSFQYHNLTPHGRRFLRACRAAHDHTDRVIRQRKAAREKHLDFLDILLGVQLSDTDLRAEVDTFMFEGHDTTTSGISWFLYCMALYPEHQQRCREEVREILGDQSFQWEDLAKMTYLTMCMKECFRLYPPVPQVYRQLSKPVSFDGRSLPAGSLISLHIYALHRNSDVWPDPEVFDPLRFSPENSRHPYAFIPFSGPRNCIGQQFAMNEMKVVTALCLLRFEFSVDPLRLPIKLPQLVLRSKNGIHLYLKPLG

6vbyA

0.19

0.18

5.66

0.71

MapAlign

-----------------------------RLPPGPAGA-PVVGNWLQV-GDDLNHRNLMSLAKRFGDIFLLRMGVRNLVVVSTPELAKEVLGVEFGSRTRNVVFDIFTGGQDMTVYGDHWRKMRRIMTVPFNKVVAQNRVGWEEEARLVVEDVRPRAAAEGVVIRRRLQLMMYNDMFRIMFDTRFESEPLFNKLKALNAERSRLSQYGDFIPLRPFLRGYLNRCHDLKTRRMKVFEDFVQERKKVMGEIRCAMDHILEAEINHDNVLYIVENINVAAIETTLWSIEWGIAELVNHPAIQSKLREEMDSVLGAGPVTEPDLERLPYLQAIVKETLRLRMAIPLLPHMNLNDGKLAGYDIPAESKILVNAWFLANDPKRWVRPDEFRPERFLEEEVEAHGRFVPFGVGRSCPGIILALPIIGITLGRLVQNFQLLPPPKIDTTEKGQFSNQIAKHATIVCKPL-

1zo4B

0.16

0.15

5.03

0.38

CEthreader

----------------------------TIKEMPQPKTFGELKNLPLLN-TDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVRDFAGDGLHEKNWKKAHNILLPSFSQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYQPHPFITSMVRALDEAMNKLQRANPDDYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSDDLLTHMLNGPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTSPAFSLYAKEDTVLGEYPLEKGDELMVLIPQLHRDKTIWDDVEEFRPERFENPSAIPQHAFKPFGGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPE-GFVVKAKSKK

5t6qA

0.17

0.16

5.42

1.80

MUSTER

----------GFLKLLRLLLRRQRLARAMDSFPGPP-THWLFGHALEIQKTG-SLDKVVTWTQQFPYAHPLWVGFIGFLNIYEPDYAKAVYSRGDPKAPVYDFFLQWIGKGLLVLDGKWFQHRKLLTPGFHYDVLKPYVAIFADSTRIMLEKWEKKCEGKSFDIFSDVGHMALDTLMKCTFGKGHRDSSYYVAVSELTLLMQQRIDFQYHNDFIYWLTPHGRRFLRACRAAHDHTDRVIRQRKAALQKHLDFLDILLDVRLSDTDLRAEVDTFMFEGHDTTTSGISWFLYCMALYPEHQQRCREEVREILGDQSFQWEDLAKMTYLTMCMKECFRLYPPVPQVYRQLSKPVSFDGRSLPAGSLISLHIYALHRNSDVWPDPEVFDPLRFSPENSRHPYAFIPFSGPRNCIGQQFAMNEMKVVTALCLLRFEFSVDPLRLPIKLPQLVLRSKNGIHLYLKPLG

1zo4B

0.16

0.15

4.91

1.18

HHsearch

---------------------------TIKEMPQPK-TFGELKNLPLLNT-DKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESFDKNLALKFVRDFAGDGLFTSHEKNWKKAHNILLPSFSQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFDQPHPFITSMVRALDEAMNKLRANPDDAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSDDLLTHMLNGPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTSPAFSLYAKEDTVLGGYPLEKGDELMVLIPQLHRDKTIWDDVEEFRPERFENPSAIPQHAFKPFGGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPE-GFVVKAKSKK

4k0fA

0.17

5.60

3.63

FFAS-3D

LPLAQRISLIIIIPFIYNIVWQLLYSLRKDRPPLVFYWIPWVGSAVVYGMK--PYEFFEECQKKYGDIFSFVLLGRVMTVYLGPKGHEFVFNAKLADVSAEAAYAHLTTPVFGKGVIYLMEQKKFVKGALTKEAFKSYVPLIAEEVYKYFRDSKNERTTGTIDVMVTQPEMTIFTASRSLLGKEMRADTDFAYLYSDLDKGFTPINFVFPN----LPLEHYRKRDHAQKAISGTYMSLIKERRKNNDQDRDLIDSLMKNKMTDQEIANLLIGVLMGGQHTSAATSAWILLHLAERPDVQQELYEEQMRVLDKKELTYDLLQEMPLLNQTIKETLRMHHPLHSLFRKVMKDMHVTSYVIPAGYHVLVSPGYTHLRDEYFPNAHQFNIHRWNNDSKGVSSPYLPFGGRHRCIGEHFAYCQLGVLMSIFIRTLKWHYPEGKTVPPPDSMVTLPTGPAKIIWEKRN

2ve3A

0.16

0.14

4.63

1.00

EigenThreader

---------------------------NSLPIPPGDFGLPWLGETLNFLNDGDFGKKRQQQFG---PIFKTRLFGKNVIFISGALANRFLFTKEQETPLSTRILLG--PNALATQMGEIHRSRRKILYQAFLRTLDSYLPKMDGIVQGYLEQWGKA-----NEWYPQLRRMTFDVAATLFM------GEKVSQNFPWFETYIQGLFSLPIPLP----NTLFGKSQRARALLLAELEKIIKARQQQPPSEEDALGILLAARDDNPELKDQILLLLFAGHETLTSALSSFCLLLGQHSDIRERVRQEQNKLQLSQELTAETLKKMPYLDQVLQEVLRLIPPVGGGFREQDCQFQ--GFHFPKGWLVSYQISQTHADPDLYPDPEKFDPERFTPDGSATHNHVPFGGGLRECLGKEFARLEMKLFATRLIQQFDWTLLPGQNLELVVTPSPRPKDNLRVKLHSL-

4h24A

0.16

0.15

5.02

2.38

CNFpred

----------------------------IKEMPQPKTF-GELKNLPLLNT-DKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDFDKNLSQALKFARDFAGDGLVTSWEKNWKKAHNILLPSFSQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVSEDMTRLTLDTIGLCGFNYRFNSRDQPHPFIISMVRALDEVMNKLQRANPDDYDENKRQFQEDIKVMNDLVDKIIADRKARGEQSDDLLTQMLNGPLDDGNIRYQIITFLIAGHEATSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGEYPLEKGDEVMVLIPQLHRDKTVWGDVEEFRPERFENPSAIPQHAFKPFGNQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPK-GFVVKAKSKK

4k0fA

0.17

5.60

1.50

DEthreader

NILSHFLALRLIIIIPFIYNIVWQLLYSLRRPPLVFYWIPWVGSAVVYG--MKPYEFFEECQKKYGDIFSFVLLGRVMTVYLGPKGHEFVFNAKDVSAAAYAHLTTPVGKGIYDCPNSRLMEQKKFVKGALTEAFKSYVPLIAEEVYKYFRDFLNERTTGTIDVMVTQPEMTIFTASRSLLGEMRALDTDFAYLYSDLDKGFT--PINFV----FPNLPL-EHYRKRDHAQKAISGTYMSLIKERDIQDRDLIDSLMKSKMTDQEIANLLIGVLMGGQHTSAATSAWILLHLAERPDVQQELYEEQMRVLGGKELTYDLLQEMPLLNQTIKETLRMHHPLHSLFRKVMDMHVPNTYVIPAGYHVLVSPGYTHLRDEYFPNAHQFNIHRWNNDSASYSSPYLPFGGGHRCIGEHFAYCQLGVLMSIFIRTLKWHYPEGKTPPPDFSMVTLPTGPAKIIWEKRN

(a)	ID1 is the number of template residues identical to query divided by number of aligned residues.
(b)	ID2 is the number of template residues identical to query divided by query sequence length.
(c)	Cov is equal the number of aligned template residues divided by query sequence length.
(d)	Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold.
(e)	Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz).
(f)	Template residues identical to query sequence are highlighted in color.

Top 1 final models from D-I-TASSER

Click to view	Rank^a	Download	Estimated TM-score^b
	1	model1.pdb.gz	0.8266

(a)

D-I-TASSER simulations generate a large ensemble of structural conformations, i.e. decoys. These decoys are clustered by SPICKER based on pairwise structure similarity to report up to five final models from the five largest clusters. Models are ranked in descending order of cluster size. If the simulations converge well, it is possible to have less than 5 models generated, which is usually an indication of good model quality.

(b)

The model confidence is quantitatified by estimated TM-score (eTM-score), calculated based on significance of threading template alignments, contact map satisfaction rate, mean absolute error between distance of model and distance of DeepPotential, and convergence of D-I-TASSER simulations. eTM-score is typically in the range of [0, 1], with higher eTM-score signifies higher model confidence.

Proteins with similar structure

Top 10 structural analogs in PDB (as identified by TM-align)

Rank	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov.	Download Alignment
1	5t6qA	0.93	1.47	0.155	0.965	model1_5t6qA.pdb.gz
2	6l8hA	0.88	2.16	0.179	0.933	model1_6l8hA.pdb.gz
3	1zo4B	0.88	2.10	0.155	0.933	model1_1zo4B.pdb.gz
4	5ylwA	0.87	2.02	0.178	0.924	model1_5ylwA.pdb.gz
5	1tqnA	0.87	2.66	0.204	0.942	model1_1tqnA.pdb.gz
6	6vbyA	0.87	2.36	0.186	0.933	model1_6vbyA.pdb.gz
7	3na0A	0.86	2.56	0.142	0.942	model1_3na0A.pdb.gz
8	3k9vA	0.86	2.53	0.173	0.935	model1_3k9vA.pdb.gz
9	4k0fA	0.85	2.74	0.168	0.935	model1_4k0fA.pdb.gz
10	3c6gB	0.85	2.39	0.171	0.926	model1_3c6gB.pdb.gz

(a)	Query structure is shown in cartoon, while the structural analog is displayed using backbone trace.
(b)	Ranking of proteins is based on TM-score of the structural alignment between the query structure and known structures in the PDB library.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov. represents the coverage of the alignment by TM-align and is equal to the number of structurally aligned residues divided by length of the query protein.

Predicted Gene Ontology (GO) Terms

Molecular Function (MF)

GO term	Cscore^GO	Name
GO:0016491	0.99	oxidoreductase activity
GO:0004497	0.96	monooxygenase activity
GO:0016705	0.82	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:1901363	0.77	heterocyclic compound binding
GO:0097159	0.77	organic cyclic compound binding
GO:0043167	0.77	ion binding
GO:0046872	0.76	metal ion binding
GO:0046914	0.75	transition metal ion binding
GO:0016709	0.75	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen
GO:0005506	0.74	iron ion binding
GO:0020037	0.72	heme binding
GO:0008395	0.64	steroid hydroxylase activity
GO:0008289	0.53	lipid binding
GO:0033695	0.52	oxidoreductase activity, acting on CH or CH2 groups, quinone or similar compound as acceptor
GO:0070643	0.51	vitamin D 25-hydroxylase activity

Download full result of the above consensus prediction.

Click the graph to show a high resolution version.

(a)

Cscore^GO is the confidence score of predicted GO terms. Cscore^GO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.

(b)

The graph shows the predicted terms within the Gene Ontology hierachy for Molecular Function. Confidently predicted terms are color coded by Cscore^GO:

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Biological Process (BP)

GO term	Cscore^GO	Name
GO:0044710	1.00	single-organism metabolic process
GO:0009058	0.89	biosynthetic process
GO:0044711	0.88	single-organism biosynthetic process
GO:0071704	0.85	organic substance metabolic process
GO:0009987	0.83	cellular process
GO:0044238	0.82	primary metabolic process
GO:0044237	0.80	cellular metabolic process
GO:0006629	0.78	lipid metabolic process
GO:0044763	0.77	single-organism cellular process
GO:0044281	0.77	small molecule metabolic process
GO:1901360	0.72	organic cyclic compound metabolic process
GO:0055114	0.72	oxidation-reduction process
GO:1901576	0.68	organic substance biosynthetic process
GO:0065007	0.66	biological regulation
GO:0044255	0.66	cellular lipid metabolic process
GO:0008202	0.66	steroid metabolic process
GO:1901362	0.63	organic cyclic compound biosynthetic process
GO:0008610	0.63	lipid biosynthetic process
GO:1901615	0.62	organic hydroxy compound metabolic process
GO:0044249	0.61	cellular biosynthetic process
GO:0065008	0.60	regulation of biological quality
GO:0050896	0.60	response to stimulus
GO:0006694	0.60	steroid biosynthetic process
GO:1901617	0.59	organic hydroxy compound biosynthetic process
GO:0042445	0.59	hormone metabolic process
GO:0006807	0.59	nitrogen compound metabolic process
GO:0034641	0.58	cellular nitrogen compound metabolic process
GO:0019748	0.58	secondary metabolic process
GO:1901564	0.57	organonitrogen compound metabolic process
GO:0044283	0.57	small molecule biosynthetic process
GO:0044550	0.56	secondary metabolite biosynthetic process
GO:0042221	0.56	response to chemical
GO:0044248	0.55	cellular catabolic process
GO:1902652	0.54	secondary alcohol metabolic process
GO:0044712	0.54	single-organism catabolic process
GO:1901575	0.53	organic substance catabolic process
GO:0070887	0.53	cellular response to chemical stimulus
GO:0034754	0.53	cellular hormone metabolic process
GO:0017144	0.53	drug metabolic process
GO:0006721	0.53	terpenoid metabolic process
GO:1901565	0.52	organonitrogen compound catabolic process
GO:1901361	0.52	organic cyclic compound catabolic process
GO:0070988	0.52	demethylation
GO:0044108	0.52	cellular alcohol biosynthetic process
GO:0042737	0.52	drug catabolic process
GO:0042493	0.52	response to drug
GO:0042359	0.52	vitamin D metabolic process
GO:0016042	0.52	lipid catabolic process
GO:0009820	0.52	alkaloid metabolic process
GO:0009410	0.52	response to xenobiotic stimulus
GO:0071466	0.51	cellular response to xenobiotic stimulus
GO:0070640	0.51	vitamin D3 metabolic process
GO:0046173	0.51	polyol biosynthetic process
GO:0044270	0.51	cellular nitrogen compound catabolic process
GO:0042368	0.51	vitamin D biosynthetic process

Download full result of the above consensus prediction.

Click the graph to show a high resolution version.

(a)

Cscore^GO is the confidence score of predicted GO terms. Cscore^GO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.

(b)

The graph shows the predicted terms within the Gene Ontology hierachy for Biological Process. Confidently predicted terms are color coded by Cscore^GO:

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Cellular Component (CC)

GO term	Cscore^GO	Name
GO:0016020	0.94	membrane
GO:0044464	0.90	cell part
GO:0044424	0.82	intracellular part
GO:0044444	0.69	cytoplasmic part
GO:0044422	0.50	organelle part

Download full result of the above consensus prediction.

Click the graph to show a high resolution version.

(a)

Cscore^GO is the confidence score of predicted GO terms. Cscore^GO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.

(b)

The graph shows the predicted terms within the Gene Ontology hierachy for Cellular Component. Confidently predicted terms are color coded by Cscore^GO:

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Predicted Enzyme Commission (EC) Numbers

Top 5 enzyme homologs in PDB

Rank	Cscore^EC	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov.	EC Number	Predicted Active Site Residues
1	0.246	1egyA	0.740	2.63	0.149	0.814	1.14.-.-	NA
2	0.198	2q9fA	0.843	2.04	0.180	0.887	1.14.13.98	NA
3	0.190	3eqmA	0.841	2.60	0.134	0.922	1.14.14.1	NA
4	0.188	3i3kA	0.853	2.43	0.169	0.924	1.14.13.70	NA
5	0.182	1n6bA	0.846	2.68	0.160	0.933	1.14.14.1	NA

	Click on the radio buttons to visualize predicted active site residues.
(a)	Cscore^EC is the confidence score for the Enzyme Commission (EC) number prediction. Cscore^EC values range in between [0-1]; where a higher score indicates a more reliable EC number prediction.
(b)	TM-score is a measure of global structural similarity between query and template protein.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein.

Predicted Ligand Binding Sites

Template proteins with similar binding site:

Click to view	Rank	Cscore^LB	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov.	BS-score	Lig. Name	Download Complex	Predicted binding site residues
	1	0.64	1tqnA	0.866	2.66	0.204	0.942	1.03	HEM	complex1.pdb.gz	98,112,113,120,124,131,276,277,280,284,339,340,345,402,403,404,407,408,409,410,411,415,419

	Click on the radio buttons to visualize predicted binding site and residues.
(a)	Cscore^LB is the confidence score of predicted binding site. Cscore^LB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction.
(b)	BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
(c)	TM-score is a measure of global structural similarity between query and template protein.
(d)	RMSD^a the RMSD between residues that are structurally aligned by TM-align.
(e)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(f)	Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein.

[Click result.zip to download all results on this page]

References:
1.	Wei Zheng, Qiqige Wuyun, Yang Li, Quancheng Liu, Xiaogen Zhou, Yiheng Zhu, P. Lydia Freddolino, Yang Zhang. Integrating deep learning potentials with I-TASSER for single- and multi-domain protein structure prediction. Submitted. 2023.