GO:0003676	F	0.92	nucleic acid binding
GO:0003677	F	0.91	DNA binding
GO:0043565	F	0.67	sequence-specific DNA binding
GO:0044212	F	0.52	transcription regulatory region DNA binding
GO:0003700	F	0.50	transcription factor activity, sequence-specific DNA binding
GO:0000981	F	0.32	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003690	F	0.28	double-stranded DNA binding
GO:0000976	F	0.25	transcription regulatory region sequence-specific DNA binding
GO:0008013	F	0.24	beta-catenin binding
GO:0044877	F	0.23	macromolecular complex binding
GO:0003682	F	0.21	chromatin binding
GO:0008301	F	0.17	DNA binding, bending
GO:0005102	F	0.17	receptor binding
GO:0003705	F	0.17	transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
GO:0000977	F	0.16	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228	F	0.15	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0001077	F	0.14	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0046983	F	0.13	protein dimerization activity
GO:0043566	F	0.13	structure-specific DNA binding
GO:0001047	F	0.12	core promoter binding
GO:0046982	F	0.11	protein heterodimerization activity
GO:0035326	F	0.11	enhancer binding
GO:0001046	F	0.11	core promoter sequence-specific DNA binding
GO:0000400	F	0.11	four-way junction DNA binding
