5w1x/2/1:I/1:J

Sequences
>5w1x-a2-m1-cI (length=422) [Search sequence]
AVVNTDDYVTRTSIFYHAGSSRLLTVGDPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPD
PNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNV
SEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTASKSRPLSQGDCPPLELKNTVLEDGD
MVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARH
FWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGH
NNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQL
CTITLTADVMSYIQSMNSSILEDWNNKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQ
AG
>5w1x-a2-m1-cJ (length=422) [Search sequence]
AVVNTDDYVTRTSIFYHAGSSRLLTVGDPYFRVPAGGGNKQDIPKVSAYQYRVFRVQLPD
PNKFGLPDTSIYNPETQRLVWACAGVEIGRGQPLGVGLSGHPFYNKLDDTESSHAATSNV
SEDVRDNVSVDYKQTQLCILGCAPAIGEHWAKGTASKSRPLSQGDCPPLELKNTVLEDGD
MVDTGYGAMDFSTLQDTKCEVPLDICQSICKYPDYLQMSADPYGDSMFFCLRREQLFARH
FWNRAGTMGDTVPQSLYIKGTGMRASPGSCVYSPSPSGSIVTSDSQLFNKPYWLHKAQGH
NNGVCWHNQLFVTVVDTTRSTNLTICASTQSPVPGQYDATKFKQYSRHVEEYDLQFIFQL
CTITLTADVMSYIQSMNSSILEDWNNKDPYDKLKFWNVDLKEKFSLDLDQYPLGRKFLVQ
AG
Structure information
PDB ID 5w1x (database links: RCSB PDB PDBe PDBj PDBsum)
Title Crystal Structure of Humanpapillomavirus18 (HPV18) Capsid L1 Pentamers Bound to Heparin Oligosaccharides
Assembly ID 2
Resolution 3.374Å
Method of structure determination X-RAY DIFFRACTION
Number of inter-chain contacts 244
Sequence identity between the two chains 1.0
PubMed citation 21115492
Chain information
Chain 1 Chain 2
Model ID 1 1
Chain ID I J
UniProt accession P06794 P06794
Species 333761 (human papillomavirus 18) 333761 (human papillomavirus 18)
Function annotation BioLiP:5w1xJ
3D structure
Switch viewer: [NGL] [JSmol]
Dimer structure: Chain 1 in red; Chain 2 in blue.
Color: [By chain]   [By residue index]  
Spin: [Spin off]   [Spin on]   [Reset]
Render: [Low quality]   [High quality]  
Background: [Black]   [White]  
Download: 5w1x-a2-m1-cI_5w1x-a2-m1-cJ.pdb.gz
Full biological assembly
Color: [By chain]   [By residue index]  
Spin: [Spin off]   [Spin on]   [Reset]
Render: [Low quality]   [High quality]  
Background: [Black quality]   [White quality]  
Download: 5w1x-assembly2.cif.gz
Similar dimers
Other dimers with similar sequences and structures 2r5i/1/1:A/1:B 2r5i/1/1:A/1:E 2r5i/1/1:B/1:C 2r5i/1/1:C/1:D 2r5i/1/1:D/1:E 2r5i/2/1:F/1:G 2r5i/2/1:F/1:J 2r5i/2/1:G/1:H 2r5i/2/1:H/1:I 2r5i/2/1:I/1:J 2r5i/3/1:K/1:L 2r5i/3/1:K/1:O 2r5i/3/1:L/1:M 2r5i/3/1:M/1:N 2r5i/3/1:N/1:O 5w1x/1/1:A/1:B 5w1x/1/1:A/1:E 5w1x/1/1:B/1:C 5w1x/1/1:C/1:D 5w1x/1/1:D/1:E 5w1x/2/1:F/1:G 5w1x/2/1:F/1:J 5w1x/2/1:G/1:H 5w1x/2/1:H/1:I 5w1x/3/1:K/1:L 5w1x/3/1:K/1:O 5w1x/3/1:L/1:M 5w1x/3/1:M/1:N 5w1x/3/1:N/1:O
Other dimers with similar sequences but different poses
  • 5w1x/3/1:K/1:M 2r5i/1/1:A/1:C 2r5i/1/1:A/1:D 2r5i/1/1:B/1:D 2r5i/1/1:B/1:E 2r5i/1/1:C/1:E 2r5i/2/1:F/1:H 2r5i/2/1:F/1:I 2r5i/2/1:G/1:I 2r5i/2/1:G/1:J 2r5i/2/1:H/1:J 2r5i/3/1:K/1:M 2r5i/3/1:K/1:N 2r5i/3/1:L/1:N 2r5i/3/1:L/1:O 2r5i/3/1:M/1:O 5w1x/1/1:A/1:C 5w1x/1/1:A/1:D 5w1x/2/1:F/1:H 5w1x/2/1:F/1:I 5w1x/2/1:G/1:I 5w1x/2/1:G/1:J 5w1x/2/1:H/1:J 5w1x/3/1:K/1:N 5w1x/3/1:L/1:O 5w1x/3/1:M/1:O
    		•

    [Back to Home]