5y3d/1/1:B/1:E

Sequences
>5y3d-a1-m1-cB (length=479) [Search sequence]
PSGTYAGLPIADYGDAPPLSTKTMFWRTSPEKLPPGAWEPAYLGSKDERVDGPSLQQVMR
DQLKPYSEPRGLLPPQEILDAVCDAIENRLENTLEPQKPWTFKKACESLDKNTSSGYPYH
KQKSKDWTGSAFIGDLGDQATHANNMYEMGKSMRPIYTAALKDELVKPDKIYGKIKKRLL
WGSDLGTMIRAARAFGPFCDALKETCIFNPIRVGMSMNEDGPFIFARHANFRYHMDADYT
RWDSTQQRAILKRAGDIMVRLSPEPDLARVVMDDLLAPSLLDVGDYKIVVEEGLPSGCPC
TTQLNSLAHWILTLCAMVEVTRVDPDIVMQESEFSFYGDDEVVSTNLELDMVKYTMALRR
YGLLPTRADKEEGPLERRQTLQGISFLRRAIVGDQFGWYGRLDRASIDRQLLWTKGPNHQ
NPFETLPGSQLMALLGEAAMHGEKYYRTVASRVSKEAAQSGIEMVVPRHRSVLRWVRFG
>5y3d-a1-m1-cE (length=483) [Search sequence]
PSGTYAGLPIADYGDAPPLSTKTMFWRTSPEKLPPGAWEPAYLGSKDERVDGPSLQQVMR
DQLKPYSEPRGLLPPQEILDAVCDAIENRLENTLEPQKPWTFKKACESLDKNTSSGYPYH
KQKSKDWTGSAFIGDLGDQATHANNMYEMGKSMRPIYTAALKDELVKPDKIYGKIKKRLL
WGSDLGTMIRAARAFGPFCDALKETCIFNPIRVGMSMNEDGPFIFARHANFRYHMDADYT
RWDSTQQRAILKRAGDIMVRLSPEPDLARVVMDDLLAPSLLDVGDYKIVVEEGLPSGCPC
TTQLNSLAHWILTLCAMVEVTRVDPDIVMQESEFSFYGDDEVVSTNLELDMVKYTMALRR
YGLLPTRADKEEGPLERRQTLQGISFLRRAIVGDQFGWYGRLDRASIDRQLLWTKGPNHQ
NPFETLPGHRPSQLMALLGEAAMHGEKYYRTVASRVSKEAAQSGIEMVVPRHRSVLRWVR
FGT
Structure information
PDB ID 5y3d (database links: RCSB PDB PDBe PDBj PDBsum)
Title Structural insight into the interaction between RNA polymerase and VPg for norovirus replication
Assembly ID 1
Resolution 3.14Å
Method of structure determination X-RAY DIFFRACTION
Number of inter-chain contacts 26
Sequence identity between the two chains 1.0
Chain information
Chain 1 Chain 2
Model ID 1 1
Chain ID B E
UniProt accession Q80J95 Q80J95
Species 223997 (Murine norovirus 1) 223997 (Murine norovirus 1)
3D structure
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Dimer structure: Chain 1 in red; Chain 2 in blue.
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Download: 5y3d-a1-m1-cB_5y3d-a1-m1-cE.pdb.gz
Full biological assembly
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Download: 5y3d-assembly1.cif.gz
Similar dimers
Other dimers with similar sequences but different poses
  • 3upf/4/1:C/2:C 3nah/1/1:A/2:A 3nah/1/1:B/1:C 3nah/1/2:B/2:C 3nai/1/1:A/2:A 3nai/2/1:B/1:C 3qid/1/1:A/2:A 3qid/2/1:B/1:C 3sfg/1/1:A/2:A 3sfg/2/1:B/1:C 3sfu/1/1:A/2:A 3sfu/2/1:C/1:B 3upf/4/1:A/1:B 3upf/4/2:A/2:B 3uqs/4/1:A/1:B 3uqs/4/1:C/2:C 3uqs/4/2:A/2:B 3ur0/4/1:A/1:B 3ur0/4/2:C/3:C 3ur0/4/4:A/4:B 4nru/7/1:A/1:B 4nru/7/1:F/1:E 4nru/7/2:C/2:D 5y3d/1/1:A/1:B 5y3d/1/1:C/1:E 5y3d/1/1:D/1:F
  • 3uqs/4/1:A/2:B 3nah/1/1:B/1:A 3nah/1/1:B/2:C 3nah/1/1:C/2:A 3nah/1/1:C/2:B 3nah/1/2:B/2:A 3nah/1/2:C/1:A 3upf/4/1:A/2:B 3upf/4/1:C/1:A 3upf/4/1:C/2:B 3upf/4/2:A/1:B 3upf/4/2:C/1:B 3upf/4/2:C/2:A 3uqs/4/1:C/1:A 3uqs/4/1:C/2:B 3uqs/4/2:A/1:B 3uqs/4/2:C/1:B 3uqs/4/2:C/2:A 3ur0/4/1:A/4:B 3ur0/4/2:C/1:B 3ur0/4/2:C/4:A 3ur0/4/3:C/1:A 3ur0/4/3:C/4:B 3ur0/4/4:A/1:B 4nru/7/1:A/1:E 4nru/7/1:A/2:C 4nru/7/1:E/2:C 4nru/7/1:F/1:B 4nru/7/1:F/2:D 4nru/7/2:D/1:B
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