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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=85)
AAKKTVTKADLVDQVAQATGLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKR
KARTIPATQYPAFKPGKALKDKVKK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5eka-a1-m2-cA 85 85 1.0000 1.0000 1.0000 2.41e-54 5eka-a1-m1-cA_5eka-a1-m2-cA
2 5eka-a1-m1-cA 85 85 1.0000 1.0000 1.0000 2.41e-54 5eka-a1-m1-cA_5eka-a1-m2-cA
3 1hue-a1-m1-cB 90 90 0.5412 0.5111 0.5111 9.74e-24 1hue-a1-m1-cA_1hue-a1-m1-cB
4 1hue-a1-m1-cA 90 90 0.5412 0.5111 0.5111 9.74e-24 1hue-a1-m1-cA_1hue-a1-m1-cB
5 5fbm-a1-m1-cA 83 81 0.5529 0.5663 0.5802 8.39e-23 5fbm-a1-m1-cA_5fbm-a1-m1-cB
6 5fbm-a1-m1-cB 83 82 0.5529 0.5663 0.5732 1.36e-22 5fbm-a1-m1-cA_5fbm-a1-m1-cB
7 1huu-a4-m3-cB 74 79 0.4941 0.5676 0.5316 1.34e-21 1huu-a4-m1-cB_1huu-a4-m3-cB
8 1huu-a4-m1-cB 74 79 0.4941 0.5676 0.5316 1.34e-21 1huu-a4-m1-cB_1huu-a4-m3-cB
9 4qjn-a2-m1-cD 90 90 0.5059 0.4778 0.4778 2.73e-21 4qjn-a2-m1-cB_4qjn-a2-m1-cD
10 4qjn-a2-m1-cB 90 90 0.5059 0.4778 0.4778 2.73e-21 4qjn-a2-m1-cB_4qjn-a2-m1-cD
11 5lvt-a2-m1-cD 91 89 0.5529 0.5165 0.5281 1.95e-19 5lvt-a2-m1-cB_5lvt-a2-m1-cD
12 5lvt-a2-m1-cB 91 89 0.5529 0.5165 0.5281 1.95e-19 5lvt-a2-m1-cB_5lvt-a2-m1-cD
13 3rhi-a2-m1-cD 82 82 0.4471 0.4634 0.4634 1.90e-18 3rhi-a2-m1-cD_3rhi-a2-m1-cC
14 3rhi-a2-m1-cC 90 90 0.4471 0.4222 0.4222 5.92e-17 3rhi-a2-m1-cD_3rhi-a2-m1-cC
15 1p71-a1-m1-cA 94 89 0.4471 0.4043 0.4270 1.67e-16 1p71-a1-m1-cB_1p71-a1-m1-cA
16 1p71-a1-m1-cB 93 89 0.4471 0.4086 0.4270 1.90e-16 1p71-a1-m1-cB_1p71-a1-m1-cA
17 1b8z-a1-m1-cB 67 79 0.4706 0.5970 0.5063 2.27e-15 1b8z-a1-m1-cA_1b8z-a1-m1-cB
18 1b8z-a1-m1-cA 67 79 0.4706 0.5970 0.5063 2.27e-15 1b8z-a1-m1-cA_1b8z-a1-m1-cB
19 6o8q-a1-m1-cH 91 90 0.4471 0.4176 0.4222 4.76e-15 6o8q-a1-m1-cG_6o8q-a1-m1-cH
20 6o8q-a1-m1-cG 91 90 0.4471 0.4176 0.4222 4.76e-15 6o8q-a1-m1-cG_6o8q-a1-m1-cH
21 6n2l-a1-m2-cA 88 84 0.4235 0.4091 0.4286 1.63e-13 6n2l-a1-m1-cA_6n2l-a1-m2-cA
22 6n2l-a1-m1-cA 88 84 0.4235 0.4091 0.4286 1.63e-13 6n2l-a1-m1-cA_6n2l-a1-m2-cA
23 2np2-a1-m1-cB 102 95 0.4000 0.3333 0.3579 6.25e-13 2np2-a1-m1-cA_2np2-a1-m1-cB
24 2np2-a1-m1-cA 102 95 0.4000 0.3333 0.3579 6.25e-13 2np2-a1-m1-cA_2np2-a1-m1-cB
25 4p3v-a1-m2-cA 72 79 0.3529 0.4167 0.3797 3.50e-12 4p3v-a1-m1-cA_4p3v-a1-m2-cA
26 4p3v-a1-m1-cA 72 79 0.3529 0.4167 0.3797 3.50e-12 4p3v-a1-m1-cA_4p3v-a1-m2-cA
27 4dky-a1-m2-cA 97 86 0.3059 0.2680 0.3023 1.55e-06 4dky-a1-m1-cA_4dky-a1-m2-cA
28 4dky-a1-m1-cA 97 86 0.3059 0.2680 0.3023 1.55e-06 4dky-a1-m1-cA_4dky-a1-m2-cA
29 1exe-a1-m1-cB 99 86 0.3529 0.3030 0.3488 3.70e-06 1exe-a1-m1-cA_1exe-a1-m1-cB
30 1exe-a1-m1-cA 99 86 0.3529 0.3030 0.3488 3.70e-06 1exe-a1-m1-cA_1exe-a1-m1-cB
31 5l8z-a1-m2-cA 95 88 0.3176 0.2842 0.3068 6.16e-05 5l8z-a1-m1-cA_5l8z-a1-m2-cA
32 5l8z-a1-m1-cA 95 88 0.3176 0.2842 0.3068 6.16e-05 5l8z-a1-m1-cA_5l8z-a1-m2-cA
33 1wtu-a1-m1-cB 99 86 0.3412 0.2929 0.3372 2.24e-04 1wtu-a1-m1-cA_1wtu-a1-m1-cB
34 1wtu-a1-m1-cA 99 86 0.3412 0.2929 0.3372 2.24e-04 1wtu-a1-m1-cA_1wtu-a1-m1-cB
35 2ndp-a1-m1-cB 99 61 0.2000 0.1717 0.2787 0.10 2ndp-a1-m1-cA_2ndp-a1-m1-cB
36 2ndp-a1-m1-cA 99 61 0.2000 0.1717 0.2787 0.10 2ndp-a1-m1-cA_2ndp-a1-m1-cB
37 4eei-a1-m2-cB 423 39 0.1647 0.0331 0.3590 2.4 4eei-a1-m1-cA_4eei-a1-m2-cB, 4eei-a1-m2-cA_4eei-a1-m2-cB
38 6tvk-a1-m4-cAAA 659 45 0.2118 0.0273 0.4000 2.5 6tvk-a1-m1-cAAA_6tvk-a1-m4-cAAA, 6tvk-a1-m2-cAAA_6tvk-a1-m4-cAAA, 6tvk-a1-m3-cAAA_6tvk-a1-m4-cAAA
39 6tvk-a1-m3-cAAA 659 45 0.2118 0.0273 0.4000 2.5 6tvk-a1-m3-cAAA_6tvk-a1-m4-cAAA
40 6tvk-a1-m2-cAAA 659 45 0.2118 0.0273 0.4000 2.5 6tvk-a1-m2-cAAA_6tvk-a1-m4-cAAA
41 6tvk-a1-m1-cAAA 659 45 0.2118 0.0273 0.4000 2.5 6tvk-a1-m1-cAAA_6tvk-a1-m4-cAAA
42 4eei-a2-m2-cA 414 39 0.1647 0.0338 0.3590 2.8 4eei-a2-m1-cA_4eei-a2-m2-cA
43 4eei-a2-m1-cA 414 39 0.1647 0.0338 0.3590 2.8 4eei-a2-m1-cA_4eei-a2-m2-cA
44 4eei-a1-m2-cA 414 39 0.1647 0.0338 0.3590 2.8 4eei-a1-m2-cA_4eei-a1-m2-cB
45 4eei-a1-m1-cA 414 39 0.1647 0.0338 0.3590 2.8 4eei-a1-m1-cA_4eei-a1-m2-cB
46 3db7-a1-m2-cA 125 42 0.1529 0.1040 0.3095 5.8 3db7-a1-m1-cA_3db7-a1-m2-cA
47 3db7-a1-m1-cA 125 42 0.1529 0.1040 0.3095 5.8 3db7-a1-m1-cA_3db7-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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