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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=84)
AAVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRKFGKIEGKNVFYWFQNH
KARERQKRRRQMESAAAEFDSAIE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6wig-a1-m2-cA 84 84 1.0000 1.0000 1.0000 8.34e-58 6wig-a1-m1-cB_6wig-a1-m2-cA
2 6wig-a1-m1-cB 68 68 0.8095 1.0000 1.0000 1.01e-45 6wig-a1-m1-cB_6wig-a1-m2-cA
3 6ryd-a2-m1-cE 68 66 0.5476 0.6765 0.6970 1.30e-29 6ryd-a2-m1-cF_6ryd-a2-m1-cE
4 6ryl-a2-m1-cE 64 64 0.5357 0.7031 0.7031 7.15e-29 6ryl-a2-m1-cD_6ryl-a2-m1-cE
5 6ryl-a2-m1-cD 63 63 0.5238 0.6984 0.6984 3.23e-28 6ryl-a2-m1-cD_6ryl-a2-m1-cE
6 6ryd-a2-m1-cF 58 58 0.4881 0.7069 0.7069 9.33e-26 6ryd-a2-m1-cF_6ryd-a2-m1-cE
7 5ehm-a1-m1-cB 257 65 0.2619 0.0856 0.3385 0.049 5ehm-a1-m1-cB_5ehm-a1-m1-cA
8 5ehm-a1-m1-cA 261 65 0.2619 0.0843 0.3385 0.054 5ehm-a1-m1-cB_5ehm-a1-m1-cA
9 3rv5-a5-m4-cD 73 20 0.1071 0.1233 0.4500 1.3 3rv5-a5-m2-cB_3rv5-a5-m4-cD, 3rv5-a5-m4-cD_3rv5-a5-m4-cC
10 3rv5-a5-m2-cB 73 20 0.1071 0.1233 0.4500 1.3 3rv5-a5-m2-cB_3rv5-a5-m4-cD
11 3rv5-a5-m1-cB 73 20 0.1071 0.1233 0.4500 1.3 3rv5-a5-m1-cB_3rv5-a5-m4-cC
12 3rv5-a5-m4-cC 77 20 0.1071 0.1169 0.4500 1.4 3rv5-a5-m1-cB_3rv5-a5-m4-cC, 3rv5-a5-m4-cD_3rv5-a5-m4-cC
13 3fai-a2-m2-cA 227 36 0.1548 0.0573 0.3611 7.4 3fai-a2-m1-cA_3fai-a2-m2-cA
14 3fai-a2-m1-cA 227 36 0.1548 0.0573 0.3611 7.4 3fai-a2-m1-cA_3fai-a2-m2-cA
15 3p2y-a1-m2-cA 345 68 0.2024 0.0493 0.2500 8.0 3p2y-a1-m1-cA_3p2y-a1-m2-cA
16 3p2y-a1-m1-cA 345 68 0.2024 0.0493 0.2500 8.0 3p2y-a1-m1-cA_3p2y-a1-m2-cA
17 3lvy-a1-m1-cA 181 29 0.1310 0.0608 0.3793 8.8 3lvy-a1-m1-cB_3lvy-a1-m1-cA
18 3lvy-a1-m1-cB 180 29 0.1310 0.0611 0.3793 8.8 3lvy-a1-m1-cB_3lvy-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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