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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=85)
ADKVLKEKRKLFIRSMGEGTINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDSV
IPKGAQACQICITYICEEDSYLAGT

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5fna-a1-m1-cH 85 85 1.0000 1.0000 1.0000 4.44e-58 5fna-a1-m1-cD_5fna-a1-m1-cH, 5fna-a1-m1-cG_5fna-a1-m1-cH
2 5fna-a1-m1-cG 85 85 1.0000 1.0000 1.0000 4.44e-58 5fna-a1-m1-cG_5fna-a1-m1-cH
3 5fna-a1-m1-cD 85 85 1.0000 1.0000 1.0000 4.44e-58 5fna-a1-m1-cD_5fna-a1-m1-cH
4 7keu-a1-m1-cH 85 85 0.9882 0.9882 0.9882 3.00e-57 7keu-a1-m1-cE_7keu-a1-m1-cH
5 7keu-a1-m1-cE 85 85 0.9882 0.9882 0.9882 3.00e-57 7keu-a1-m1-cE_7keu-a1-m1-cH
6 6j52-a2-m1-cC 94 79 0.3412 0.3085 0.3671 3.57e-09 6j52-a2-m1-cD_6j52-a2-m1-cC
7 6j52-a2-m1-cD 93 79 0.3412 0.3118 0.3671 3.57e-09 6j52-a2-m1-cD_6j52-a2-m1-cC
8 5xex-a2-m1-cE 511 36 0.1412 0.0235 0.3333 2.3 5xex-a2-m1-cE_5xex-a2-m1-cF
9 5xex-a2-m1-cF 513 36 0.1412 0.0234 0.3333 2.3 5xex-a2-m1-cE_5xex-a2-m1-cF
10 8avf-a1-m1-cD 596 42 0.1529 0.0218 0.3095 2.3 8avf-a1-m1-cB_8avf-a1-m1-cD
11 8avf-a1-m1-cB 596 42 0.1529 0.0218 0.3095 2.3 8avf-a1-m1-cB_8avf-a1-m1-cD
12 8avb-a1-m1-cF 593 33 0.1294 0.0185 0.3333 3.8 8avb-a1-m1-cB_8avb-a1-m1-cF
13 8avb-a1-m1-cB 593 33 0.1294 0.0185 0.3333 3.8 8avb-a1-m1-cB_8avb-a1-m1-cF
14 3doh-a1-m3-cB 373 28 0.1294 0.0295 0.3929 4.9 3doh-a1-m2-cB_3doh-a1-m3-cB, 3doh-a1-m3-cB_3doh-a1-m3-cA
15 3doh-a1-m2-cB 373 28 0.1294 0.0295 0.3929 4.9 3doh-a1-m2-cB_3doh-a1-m3-cB
16 3doh-a1-m3-cA 375 28 0.1294 0.0293 0.3929 4.9 3doh-a1-m3-cB_3doh-a1-m3-cA

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Reference:
Jacob Schwartz et al.

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