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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
ADKVMTKDLEIDRATREVIFKGDLITLTRTEFDLLLFLASNLGRVFTRDELLDHVWGYNH
FPTTRTVDTHVLQLRQKLPGLEIETLRGVGYKMKA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7e1f-a1-m1-cA 95 95 1.0000 1.0000 1.0000 1.49e-65 7e1f-a1-m1-cB_7e1f-a1-m1-cA
2 7e1f-a1-m1-cB 93 93 0.9789 1.0000 1.0000 5.31e-64 7e1f-a1-m1-cB_7e1f-a1-m1-cA
3 7e1b-a2-m1-cE 209 95 0.9684 0.4402 0.9684 3.92e-59 7e1b-a2-m1-cH_7e1b-a2-m1-cE
4 7e1b-a1-m1-cC 209 95 0.9684 0.4402 0.9684 4.10e-59 7e1b-a1-m1-cD_7e1b-a1-m1-cC
5 7e1b-a1-m1-cD 208 95 0.9579 0.4375 0.9579 2.31e-58 7e1b-a1-m1-cD_7e1b-a1-m1-cC
6 7e1b-a2-m1-cH 208 95 0.9579 0.4375 0.9579 2.44e-58 7e1b-a2-m1-cF_7e1b-a2-m1-cH, 7e1b-a2-m1-cH_7e1b-a2-m1-cE
7 7e1b-a2-m1-cF 208 95 0.9579 0.4375 0.9579 2.44e-58 7e1b-a2-m1-cF_7e1b-a2-m1-cH
8 6kyx-a1-m2-cA 100 97 0.4211 0.4000 0.4124 5.13e-19 6kyx-a1-m1-cA_6kyx-a1-m2-cA
9 6kyx-a1-m1-cA 100 97 0.4211 0.4000 0.4124 5.13e-19 6kyx-a1-m1-cA_6kyx-a1-m2-cA
10 2oqr-a1-m2-cA 226 82 0.3895 0.1637 0.4512 1.21e-16 2oqr-a1-m1-cA_2oqr-a1-m2-cA
11 2oqr-a1-m1-cA 226 82 0.3895 0.1637 0.4512 1.21e-16 2oqr-a1-m1-cA_2oqr-a1-m2-cA
12 5za3-a1-m1-cB 100 80 0.3895 0.3700 0.4625 3.17e-15 5za3-a1-m1-cB_5za3-a1-m1-cA
13 5za3-a1-m1-cA 101 80 0.3895 0.3663 0.4625 3.47e-15 5za3-a1-m1-cB_5za3-a1-m1-cA
14 3r0j-a1-m1-cB 218 90 0.3684 0.1606 0.3889 5.46e-14 3r0j-a1-m1-cB_3r0j-a1-m1-cA
15 5ed4-a2-m1-cF 214 90 0.3684 0.1636 0.3889 6.12e-14 5ed4-a2-m1-cF_5ed4-a2-m1-cE
16 3r0j-a1-m1-cA 221 90 0.3684 0.1584 0.3889 6.37e-14 3r0j-a1-m1-cB_3r0j-a1-m1-cA
17 5ed4-a2-m1-cE 224 90 0.3684 0.1562 0.3889 6.76e-14 5ed4-a2-m1-cF_5ed4-a2-m1-cE
18 2pmu-a1-m1-cD 96 90 0.3684 0.3646 0.3889 7.33e-14 2pmu-a1-m1-cC_2pmu-a1-m1-cD
19 3q9v-a1-m2-cB 99 99 0.3474 0.3333 0.3333 2.16e-13 3q9v-a1-m1-cA_3q9v-a1-m2-cB
20 3q9v-a1-m1-cA 98 92 0.3474 0.3367 0.3587 2.92e-13 3q9v-a1-m1-cA_3q9v-a1-m2-cB
21 2pmu-a1-m1-cC 92 90 0.3579 0.3696 0.3778 7.33e-13 2pmu-a1-m1-cC_2pmu-a1-m1-cD
22 4b09-a1-m1-cA 216 97 0.3579 0.1574 0.3505 8.44e-13 4b09-a1-m1-cB_4b09-a1-m1-cA
23 5x5l-a1-m1-cA 95 91 0.3789 0.3789 0.3956 1.92e-12 5x5l-a1-m1-cA_5x5l-a1-m1-cE
24 4b09-a1-m1-cB 214 92 0.3579 0.1589 0.3696 2.02e-12 4b09-a1-m1-cB_4b09-a1-m1-cA
25 5x5l-a1-m1-cE 98 94 0.3895 0.3776 0.3936 3.01e-11 5x5l-a1-m1-cA_5x5l-a1-m1-cE
26 1ys7-a1-m1-cB 226 98 0.3789 0.1593 0.3673 3.96e-11 1ys7-a1-m1-cA_1ys7-a1-m1-cB
27 5u8m-a1-m1-cB 229 93 0.3789 0.1572 0.3871 4.85e-11 5u8m-a1-m1-cA_5u8m-a1-m1-cB
28 5u8m-a1-m1-cA 229 93 0.3789 0.1572 0.3871 4.85e-11 5u8m-a1-m1-cA_5u8m-a1-m1-cB
29 1ys7-a1-m1-cA 224 97 0.3895 0.1652 0.3814 8.07e-11 1ys7-a1-m1-cA_1ys7-a1-m1-cB
30 4nhj-a1-m1-cB 101 88 0.3158 0.2970 0.3409 4.16e-10 4nhj-a1-m1-cB_4nhj-a1-m1-cA
31 4nhj-a1-m1-cA 102 88 0.3158 0.2941 0.3409 4.30e-10 4nhj-a1-m1-cB_4nhj-a1-m1-cA
32 4kfc-a1-m1-cA 223 95 0.3684 0.1570 0.3684 1.23e-07 4kfc-a1-m1-cA_4kfc-a1-m1-cB
33 4kfc-a1-m1-cB 224 95 0.3684 0.1562 0.3684 1.34e-07 4kfc-a1-m1-cA_4kfc-a1-m1-cB
34 4s04-a2-m1-cF 219 80 0.2632 0.1142 0.3125 4.59e-06 4s04-a2-m1-cE_4s04-a2-m1-cF
35 4s04-a2-m1-cE 219 80 0.2632 0.1142 0.3125 4.59e-06 4s04-a2-m1-cE_4s04-a2-m1-cF
36 5dcm-a1-m1-cA 97 73 0.2211 0.2165 0.2877 4.14e-04 5dcm-a1-m1-cA_5dcm-a1-m1-cB
37 5dcm-a1-m1-cB 98 73 0.2211 0.2143 0.2877 4.16e-04 5dcm-a1-m1-cA_5dcm-a1-m1-cB
38 6lxm-a2-m1-cA 100 88 0.2526 0.2400 0.2727 4.16e-04 6lxm-a2-m1-cA_6lxm-a2-m1-cB
39 6lxn-a1-m1-cB 101 88 0.2526 0.2376 0.2727 4.19e-04 6lxn-a1-m1-cB_6lxn-a1-m1-cA
40 6lxm-a2-m1-cB 101 88 0.2526 0.2376 0.2727 4.19e-04 6lxm-a2-m1-cA_6lxm-a2-m1-cB
41 6lxn-a1-m1-cA 110 88 0.2526 0.2182 0.2727 5.90e-04 6lxn-a1-m1-cB_6lxn-a1-m1-cA
42 6zwt-a2-m1-cD 99 87 0.2842 0.2727 0.3103 0.001 6zwt-a2-m1-cB_6zwt-a2-m1-cD
43 6zwt-a2-m1-cB 99 87 0.2842 0.2727 0.3103 0.001 6zwt-a2-m1-cB_6zwt-a2-m1-cD
44 1p35-a1-m1-cC 295 46 0.1263 0.0407 0.2609 2.5 1p35-a1-m1-cC_1p35-a1-m1-cA
45 1p35-a2-m2-cB 298 46 0.1263 0.0403 0.2609 2.5 1p35-a2-m1-cB_1p35-a2-m2-cB
46 1p35-a2-m1-cB 298 46 0.1263 0.0403 0.2609 2.5 1p35-a2-m1-cB_1p35-a2-m2-cB
47 1p35-a1-m1-cA 299 46 0.1263 0.0401 0.2609 2.5 1p35-a1-m1-cC_1p35-a1-m1-cA
48 3td7-a1-m2-cA 253 26 0.1474 0.0553 0.5385 7.7 3td7-a1-m1-cA_3td7-a1-m2-cA
49 3td7-a1-m1-cA 253 26 0.1474 0.0553 0.5385 7.7 3td7-a1-m1-cA_3td7-a1-m2-cA
50 3w36-a1-m1-cA 470 25 0.1368 0.0277 0.5200 8.1 3w36-a1-m1-cA_3w36-a1-m1-cB
51 3w36-a1-m1-cB 471 25 0.1368 0.0276 0.5200 8.1 3w36-a1-m1-cA_3w36-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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