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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=90)
AEETCFDKYTGNTYRVGDTYERPKDSMIWDCTCIGAGRGRISCTIANRCHEGGQSYKIGD
TWRRPHETGGYMLECVCLGNGKGEWTCKPI

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2cg6-a1-m2-cA 90 90 1.0000 1.0000 1.0000 1.27e-63 2cg6-a1-m1-cA_2cg6-a1-m2-cA
2 2cg6-a1-m1-cA 90 90 1.0000 1.0000 1.0000 1.27e-63 2cg6-a1-m1-cA_2cg6-a1-m2-cA
3 3m7p-a1-m2-cA 301 85 0.3111 0.0930 0.3294 1.15e-07 3m7p-a1-m1-cA_3m7p-a1-m2-cA
4 3m7p-a1-m2-cA 301 81 0.3111 0.0930 0.3457 1.03e-06 3m7p-a1-m1-cA_3m7p-a1-m2-cA
5 3m7p-a1-m2-cA 301 41 0.1556 0.0465 0.3415 0.16 3m7p-a1-m1-cA_3m7p-a1-m2-cA
6 3m7p-a1-m1-cA 301 85 0.3111 0.0930 0.3294 1.15e-07 3m7p-a1-m1-cA_3m7p-a1-m2-cA
7 3m7p-a1-m1-cA 301 81 0.3111 0.0930 0.3457 1.03e-06 3m7p-a1-m1-cA_3m7p-a1-m2-cA
8 3m7p-a1-m1-cA 301 41 0.1556 0.0465 0.3415 0.16 3m7p-a1-m1-cA_3m7p-a1-m2-cA
9 2cse-a1-m9-c1 1264 58 0.1778 0.0127 0.2759 0.68 2cse-a1-m7-c1_2cse-a1-m9-c1, 2cse-a1-m8-c1_2cse-a1-m9-c1
10 2cse-a1-m8-c1 1264 58 0.1778 0.0127 0.2759 0.68 2cse-a1-m8-c1_2cse-a1-m9-c1
11 2cse-a1-m7-c1 1264 58 0.1778 0.0127 0.2759 0.68 2cse-a1-m7-c1_2cse-a1-m9-c1
12 7uai-a1-m1-cE 535 51 0.1667 0.0280 0.2941 2.0 7uai-a1-m1-cB_7uai-a1-m1-cE
13 7uai-a1-m1-cD 535 51 0.1667 0.0280 0.2941 2.0 7uai-a1-m1-cB_7uai-a1-m1-cD
14 7uai-a1-m1-cB 535 51 0.1667 0.0280 0.2941 2.0 7uai-a1-m1-cB_7uai-a1-m1-cD, 7uai-a1-m1-cB_7uai-a1-m1-cE
15 7og2-a1-m1-cB 610 84 0.2333 0.0344 0.2500 4.6 7og2-a1-m1-cB_7og2-a1-m1-cA
16 7og2-a1-m1-cA 622 84 0.2333 0.0338 0.2500 4.7 7og2-a1-m1-cB_7og2-a1-m1-cA
17 7vtr-a1-m2-cC 391 50 0.1667 0.0384 0.3000 6.8 7vtr-a1-m1-cA_7vtr-a1-m2-cC, 7vtr-a1-m1-cD_7vtr-a1-m2-cC, 7vtr-a1-m2-cB_7vtr-a1-m2-cC
18 7vtr-a1-m2-cB 391 50 0.1667 0.0384 0.3000 6.8 7vtr-a1-m2-cB_7vtr-a1-m2-cC
19 7vtr-a1-m1-cD 391 50 0.1667 0.0384 0.3000 6.8 7vtr-a1-m1-cD_7vtr-a1-m2-cC
20 7vtr-a1-m1-cA 391 50 0.1667 0.0384 0.3000 6.8 7vtr-a1-m1-cA_7vtr-a1-m2-cC
21 4bed-a1-m9-cC 1664 23 0.1000 0.0054 0.3913 7.9 4bed-a1-m4-cC_4bed-a1-m9-cC, 4bed-a1-m8-cA_4bed-a1-m9-cC
22 4bed-a1-m8-cA 1664 23 0.1000 0.0054 0.3913 7.9 4bed-a1-m8-cA_4bed-a1-m9-cC
23 4bed-a1-m4-cC 1664 23 0.1000 0.0054 0.3913 7.9 4bed-a1-m4-cC_4bed-a1-m9-cC

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Reference:
Jacob Schwartz et al.

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