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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=83)
AFKPGDLVFAKMKGYPHWPARIDDPPPNKYPIFFFGTHETAFLGPKDLFPYDKCKDKYGK
PNKRKGFNEGLWEIQNNPHASYS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3qby-a1-m1-cB 83 83 1.0000 1.0000 1.0000 9.35e-58 3qby-a1-m1-cB_3qby-a1-m1-cA
2 3qby-a1-m1-cA 93 90 1.0000 0.8925 0.9222 4.51e-55 3qby-a1-m1-cB_3qby-a1-m1-cA, 3qby-a1-m1-cC_3qby-a1-m1-cA
3 3qby-a1-m1-cC 76 78 0.9157 1.0000 0.9744 2.24e-50 3qby-a1-m1-cC_3qby-a1-m1-cA
4 6iiq-a1-m1-cA 99 89 0.8072 0.6768 0.7528 1.94e-43 6iiq-a1-m1-cB_6iiq-a1-m1-cA
5 6iiq-a1-m1-cB 98 89 0.8072 0.6837 0.7528 2.01e-43 6iiq-a1-m1-cB_6iiq-a1-m1-cA
6 2nlu-a1-m1-cB 100 89 0.7711 0.6400 0.7191 1.04e-42 2nlu-a1-m1-cA_2nlu-a1-m1-cB
7 2nlu-a1-m1-cA 100 89 0.7711 0.6400 0.7191 1.04e-42 2nlu-a1-m1-cA_2nlu-a1-m1-cB
8 5xsk-a1-m1-cB 91 84 0.7590 0.6923 0.7500 3.37e-42 5xsk-a1-m1-cA_5xsk-a1-m1-cB
9 5xsk-a1-m1-cA 90 84 0.7590 0.7000 0.7500 3.94e-42 5xsk-a1-m1-cA_5xsk-a1-m1-cB
10 4rxj-a1-m2-cA 108 82 0.2892 0.2222 0.2927 0.001 4rxj-a1-m1-cA_4rxj-a1-m2-cA
11 4rxj-a1-m1-cA 108 82 0.2892 0.2222 0.2927 0.001 4rxj-a1-m1-cA_4rxj-a1-m2-cA
12 5nv2-a1-m1-cB 133 21 0.1325 0.0827 0.5238 0.28 5nv2-a1-m1-cA_5nv2-a1-m1-cB
13 5nv2-a1-m1-cA 133 21 0.1325 0.0827 0.5238 0.28 5nv2-a1-m1-cA_5nv2-a1-m1-cB
14 3i44-a1-m2-cA 476 21 0.1205 0.0210 0.4762 5.1 3i44-a1-m1-cA_3i44-a1-m2-cA
15 3i44-a1-m1-cA 476 21 0.1205 0.0210 0.4762 5.1 3i44-a1-m1-cA_3i44-a1-m2-cA
16 3a14-a1-m1-cA 362 13 0.0964 0.0221 0.6154 5.9 3a14-a1-m1-cA_3a14-a1-m1-cB
17 3a14-a1-m1-cB 367 13 0.0964 0.0218 0.6154 5.9 3a14-a1-m1-cA_3a14-a1-m1-cB
18 3pmi-a5-m2-cB 119 77 0.2892 0.2017 0.3117 7.1 3pmi-a5-m1-cA_3pmi-a5-m2-cB, 3pmi-a5-m1-cC_3pmi-a5-m2-cB
19 3pmi-a5-m1-cA 119 77 0.2892 0.2017 0.3117 7.1 3pmi-a5-m1-cA_3pmi-a5-m2-cB, 3pmi-a5-m1-cC_3pmi-a5-m1-cA
20 3pmi-a5-m1-cC 118 77 0.2892 0.2034 0.3117 7.2 3pmi-a5-m1-cC_3pmi-a5-m1-cA, 3pmi-a5-m1-cC_3pmi-a5-m2-cB
21 4wk5-a1-m2-cA 256 32 0.1446 0.0469 0.3750 7.9 4wk5-a1-m1-cA_4wk5-a1-m2-cA
22 4wk5-a1-m1-cA 256 32 0.1446 0.0469 0.3750 7.9 4wk5-a1-m1-cA_4wk5-a1-m2-cA
23 3al6-a2-m1-cD 308 32 0.1446 0.0390 0.3750 9.2 3al6-a2-m1-cC_3al6-a2-m1-cD
24 3al6-a1-m1-cB 308 32 0.1446 0.0390 0.3750 9.2 3al6-a1-m1-cA_3al6-a1-m1-cB
25 3al6-a1-m1-cA 299 32 0.1446 0.0401 0.3750 9.4 3al6-a1-m1-cA_3al6-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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