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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
AKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSR
KIGSMDELEEGESYVCSSDNFFDDVEYTKNVNPNWS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2bqq-a1-m2-cA 96 96 1.0000 1.0000 1.0000 5.00e-67 2bqq-a1-m1-cA_2bqq-a1-m2-cA
2 2bqq-a1-m1-cA 96 96 1.0000 1.0000 1.0000 5.00e-67 2bqq-a1-m1-cA_2bqq-a1-m2-cA
3 6fnz-a2-m1-cB 81 60 0.1875 0.2222 0.3000 0.69 6fnz-a2-m1-cD_6fnz-a2-m1-cB
4 6fnz-a2-m1-cD 79 60 0.1875 0.2278 0.3000 0.69 6fnz-a2-m1-cD_6fnz-a2-m1-cB
5 3ded-a2-m1-cC 88 36 0.1667 0.1818 0.4444 1.3 3ded-a2-m1-cD_3ded-a2-m1-cC
6 3ded-a2-m1-cD 83 36 0.1667 0.1928 0.4444 1.5 3ded-a2-m1-cD_3ded-a2-m1-cC
7 2qne-a1-m1-cB 456 40 0.1458 0.0307 0.3500 3.3 2qne-a1-m1-cB_2qne-a1-m1-cA
8 2qne-a1-m1-cA 457 40 0.1458 0.0306 0.3500 3.3 2qne-a1-m1-cB_2qne-a1-m1-cA
9 7el9-a1-m1-cD 1731 25 0.0938 0.0052 0.3600 8.5 7el9-a1-m1-cA_7el9-a1-m1-cD
10 7el9-a1-m1-cA 1731 25 0.0938 0.0052 0.3600 8.5 7el9-a1-m1-cA_7el9-a1-m1-cD
11 5y64-a1-m1-cB 233 47 0.1250 0.0515 0.2553 8.5 5y64-a1-m1-cB_5y64-a1-m1-cC
12 5y64-a1-m1-cC 233 47 0.1250 0.0515 0.2553 8.9 5y64-a1-m1-cB_5y64-a1-m1-cC

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Reference:
Jacob Schwartz et al.

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