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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=84)
AKPEIVITYCTQCQWLLRAAWLAQELLSTFADDLGKVCLEPGTGGVFRITCDGVQVWERK
ADGGFPEAKALKQRVRDRIDPQRD

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2oka-a1-m1-cD 84 84 1.0000 1.0000 1.0000 7.89e-58 2oka-a1-m1-cA_2oka-a1-m1-cD, 2oka-a1-m1-cC_2oka-a1-m1-cD
2 2oka-a1-m1-cC 84 84 1.0000 1.0000 1.0000 7.89e-58 2oka-a1-m1-cC_2oka-a1-m1-cD
3 2oka-a1-m1-cA 84 84 1.0000 1.0000 1.0000 7.89e-58 2oka-a1-m1-cA_2oka-a1-m1-cD
4 2obk-a1-m1-cB 85 83 0.8690 0.8588 0.8795 2.32e-52 2obk-a1-m1-cA_2obk-a1-m1-cB
5 2obk-a2-m1-cH 83 83 0.8690 0.8795 0.8795 2.36e-52 2obk-a2-m1-cE_2obk-a2-m1-cH
6 2obk-a1-m1-cA 84 83 0.8690 0.8690 0.8795 2.52e-52 2obk-a1-m1-cA_2obk-a1-m1-cB
7 2obk-a2-m1-cE 80 80 0.8452 0.8875 0.8875 1.34e-50 2obk-a2-m1-cE_2obk-a2-m1-cH
8 2fa8-a1-m1-cB 86 84 0.6667 0.6512 0.6667 2.11e-36 2fa8-a1-m1-cC_2fa8-a1-m1-cB
9 2ojl-a1-m2-cA 78 77 0.6667 0.7179 0.7273 9.09e-36 2ojl-a1-m2-cB_2ojl-a1-m2-cA
10 2ojl-a1-m1-cA 78 77 0.6667 0.7179 0.7273 9.09e-36 2ojl-a1-m2-cB_2ojl-a1-m1-cA
11 2ojl-a1-m2-cB 76 77 0.6667 0.7368 0.7273 1.13e-35 2ojl-a1-m2-cB_2ojl-a1-m1-cA, 2ojl-a1-m2-cB_2ojl-a1-m2-cA
12 2p0g-a1-m1-cD 79 80 0.6190 0.6582 0.6500 6.74e-34 2p0g-a1-m1-cA_2p0g-a1-m1-cD, 2p0g-a1-m1-cC_2p0g-a1-m1-cD
13 2fa8-a1-m1-cC 80 80 0.6310 0.6625 0.6625 1.92e-33 2fa8-a1-m1-cC_2fa8-a1-m1-cB, 2fa8-a1-m1-cC_2fa8-a1-m1-cD
14 2p0g-a1-m1-cC 79 79 0.6071 0.6456 0.6456 5.79e-33 2p0g-a1-m1-cC_2p0g-a1-m1-cD
15 2fa8-a1-m1-cD 80 79 0.6190 0.6500 0.6582 1.13e-32 2fa8-a1-m1-cC_2fa8-a1-m1-cD
16 2p0g-a1-m1-cA 77 78 0.5952 0.6494 0.6410 4.60e-32 2p0g-a1-m1-cA_2p0g-a1-m1-cD
17 3dex-a4-m1-cH 83 79 0.5238 0.5301 0.5570 9.92e-27 3dex-a4-m1-cG_3dex-a4-m1-cH
18 3dex-a4-m1-cG 77 75 0.5119 0.5584 0.5733 3.03e-25 3dex-a4-m1-cG_3dex-a4-m1-cH
19 3s4b-a1-m1-cB 822 57 0.2500 0.0255 0.3684 3.0 3s4b-a1-m1-cA_3s4b-a1-m1-cB
20 3s4b-a1-m1-cA 822 57 0.2500 0.0255 0.3684 3.0 3s4b-a1-m1-cA_3s4b-a1-m1-cB
21 1uf2-a1-m9-cJ 413 35 0.1190 0.0242 0.2857 5.1 1uf2-a1-m9-cJ_1uf2-a1-m9-cE
22 1uf2-a1-m9-cP 414 35 0.1190 0.0242 0.2857 5.1 1uf2-a1-m8-cP_1uf2-a1-m9-cP, 1uf2-a1-m9-cP_1uf2-a1-m10-cC
23 1uf2-a1-m8-cP 414 35 0.1190 0.0242 0.2857 5.1 1uf2-a1-m8-cP_1uf2-a1-m9-cP
24 1uf2-a1-m10-cC 415 35 0.1190 0.0241 0.2857 5.1 1uf2-a1-m9-cP_1uf2-a1-m10-cC
25 1uf2-a1-m9-cG 417 35 0.1190 0.0240 0.2857 5.1 1uf2-a1-m9-cG_1uf2-a1-m9-cT
26 1uf2-a1-m9-cT 421 35 0.1190 0.0238 0.2857 5.1 1uf2-a1-m54-cT_1uf2-a1-m9-cT, 1uf2-a1-m9-cG_1uf2-a1-m9-cT
27 1uf2-a1-m9-cE 421 35 0.1190 0.0238 0.2857 5.1 1uf2-a1-m9-cJ_1uf2-a1-m9-cE
28 1uf2-a1-m54-cT 421 35 0.1190 0.0238 0.2857 5.1 1uf2-a1-m54-cT_1uf2-a1-m9-cT
29 6a57-a1-m2-cA 131 40 0.1429 0.0916 0.3000 5.9 6a57-a1-m1-cA_6a57-a1-m2-cA
30 6a57-a1-m1-cA 131 40 0.1429 0.0916 0.3000 5.9 6a57-a1-m1-cA_6a57-a1-m2-cA
31 3act-a1-m1-cB 822 58 0.2381 0.0243 0.3448 6.2 3act-a1-m1-cA_3act-a1-m1-cB
32 3act-a1-m1-cA 822 58 0.2381 0.0243 0.3448 6.2 3act-a1-m1-cA_3act-a1-m1-cB
33 1zup-a2-m2-cA 287 45 0.1548 0.0453 0.2889 7.3 1zup-a2-m2-cB_1zup-a2-m2-cA
34 1zup-a2-m2-cB 282 45 0.1548 0.0461 0.2889 8.0 1zup-a2-m1-cB_1zup-a2-m2-cB, 1zup-a2-m2-cB_1zup-a2-m2-cA
35 1zup-a2-m1-cB 282 45 0.1548 0.0461 0.2889 8.0 1zup-a2-m1-cB_1zup-a2-m2-cB

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Reference:
Jacob Schwartz et al.

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