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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
ALQLWQFLVALLDDPTNAHFIAWTGRGMEFKLIEPEEVARLWGIQKNRPAMNYDKLSRSL
RYYYEKGIMQKVAGERYVYKFVCEPDALFSMAFPD

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4uuv-a2-m1-cG 95 95 1.0000 1.0000 1.0000 7.90e-69 4uuv-a2-m1-cD_4uuv-a2-m1-cG
2 4uuv-a2-m1-cD 95 95 1.0000 1.0000 1.0000 7.90e-69 4uuv-a2-m1-cD_4uuv-a2-m1-cG
3 5ilv-a2-m2-cA 92 91 0.9053 0.9348 0.9451 2.96e-62 5ilv-a2-m1-cA_5ilv-a2-m2-cA
4 5ilv-a2-m1-cA 92 91 0.9053 0.9348 0.9451 2.96e-62 5ilv-a2-m1-cA_5ilv-a2-m2-cA
5 6dat-a2-m1-cD 135 89 0.5684 0.4000 0.6067 5.02e-37 6dat-a2-m1-cC_6dat-a2-m1-cD
6 6dat-a2-m1-cC 135 89 0.5684 0.4000 0.6067 5.02e-37 6dat-a2-m1-cC_6dat-a2-m1-cD
7 3wu0-a1-m1-cB 136 89 0.5684 0.3971 0.6067 5.06e-37 3wu0-a1-m1-cB_3wu0-a1-m1-cA
8 3wu0-a1-m1-cA 140 89 0.5684 0.3857 0.6067 6.34e-37 3wu0-a1-m1-cB_3wu0-a1-m1-cA
9 1gvj-a1-m1-cA 141 89 0.5684 0.3830 0.6067 6.68e-37 1gvj-a1-m1-cA_1gvj-a1-m1-cB
10 1gvj-a1-m1-cB 146 89 0.5684 0.3699 0.6067 8.80e-37 1gvj-a1-m1-cA_1gvj-a1-m1-cB
11 2nny-a1-m1-cB 129 89 0.5579 0.4109 0.5955 3.05e-36 2nny-a1-m1-cA_2nny-a1-m1-cB
12 2nny-a1-m1-cA 129 89 0.5579 0.4109 0.5955 3.05e-36 2nny-a1-m1-cA_2nny-a1-m1-cB
13 1dux-a1-m1-cF 86 86 0.5474 0.6047 0.6047 1.21e-35 1dux-a1-m1-cC_1dux-a1-m1-cF
14 1dux-a1-m1-cC 86 86 0.5474 0.6047 0.6047 1.21e-35 1dux-a1-m1-cC_1dux-a1-m1-cF
15 5ybc-a1-m1-cC 91 80 0.5158 0.5385 0.6125 1.61e-33 5ybc-a1-m1-cC_5ybc-a1-m1-cA
16 5e8i-a2-m1-cJ 93 80 0.5263 0.5376 0.6250 2.08e-33 5e8i-a2-m1-cD_5e8i-a2-m1-cJ
17 5e8i-a2-m1-cD 93 80 0.5263 0.5376 0.6250 2.08e-33 5e8i-a2-m1-cD_5e8i-a2-m1-cJ
18 5ybc-a1-m1-cA 92 80 0.5158 0.5326 0.6125 2.08e-33 5ybc-a1-m1-cC_5ybc-a1-m1-cA
19 2ypr-a1-m1-cA 96 91 0.5579 0.5521 0.5824 5.38e-33 2ypr-a1-m1-cB_2ypr-a1-m1-cA
20 2ypr-a1-m1-cB 92 91 0.5579 0.5761 0.5824 6.10e-33 2ypr-a1-m1-cB_2ypr-a1-m1-cA
21 5a96-a1-m3-cA 249 65 0.1895 0.0723 0.2769 0.47 5a96-a1-m2-cA_5a96-a1-m3-cA
22 5a96-a1-m2-cA 249 65 0.1895 0.0723 0.2769 0.47 5a96-a1-m2-cA_5a96-a1-m3-cA
23 7bpo-a1-m1-cB 164 63 0.1895 0.1098 0.2857 1.4 7bpo-a1-m1-cB_7bpo-a1-m1-cA
24 7bpo-a1-m1-cA 165 63 0.1895 0.1091 0.2857 1.5 7bpo-a1-m1-cB_7bpo-a1-m1-cA
25 5ivl-a1-m1-cA 404 34 0.1158 0.0272 0.3235 1.9 5ivl-a1-m1-cA_5ivl-a1-m1-cB
26 2e85-a1-m1-cA 156 65 0.1579 0.0962 0.2308 4.3 2e85-a1-m1-cA_2e85-a1-m1-cB
27 2e85-a1-m1-cB 157 65 0.1579 0.0955 0.2308 4.4 2e85-a1-m1-cA_2e85-a1-m1-cB
28 4ldx-a1-m1-cB 337 43 0.1474 0.0415 0.3256 7.1 4ldx-a1-m1-cA_4ldx-a1-m1-cB
29 6j6w-a1-m2-cB 94 31 0.1053 0.1064 0.3226 7.8 6j6w-a1-m1-cA_6j6w-a1-m2-cB, 6j6w-a1-m2-cA_6j6w-a1-m2-cB
30 6j6w-a1-m2-cA 94 31 0.1053 0.1064 0.3226 7.8 6j6w-a1-m2-cA_6j6w-a1-m2-cB
31 6j6w-a1-m1-cA 94 31 0.1053 0.1064 0.3226 7.8 6j6w-a1-m1-cA_6j6w-a1-m2-cB
32 1s7g-a1-m1-cD 240 34 0.1263 0.0500 0.3529 8.0 1s7g-a1-m1-cD_1s7g-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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