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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=57)
AMDTLYAILDEKKSELLQRITQEQEEKLSFIEALIQQYQEQLDKSTKLVETAIQSLD

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4m3l-a1-m1-cB 58 57 1.0000 0.9828 1.0000 2.94e-33 4m3l-a1-m1-cD_4m3l-a1-m1-cB
2 4m3l-a1-m1-cA 60 57 1.0000 0.9500 1.0000 3.03e-33 4m3l-a1-m1-cD_4m3l-a1-m1-cA
3 4m3l-a1-m1-cC 57 57 1.0000 1.0000 1.0000 3.17e-33 4m3l-a1-m1-cD_4m3l-a1-m1-cC
4 4m3l-a1-m1-cD 53 53 0.9298 1.0000 1.0000 1.16e-29 4m3l-a1-m1-cD_4m3l-a1-m1-cA, 4m3l-a1-m1-cD_4m3l-a1-m1-cB, 4m3l-a1-m1-cD_4m3l-a1-m1-cC
5 1fvf-a1-m1-cB 543 46 0.2807 0.0295 0.3478 1.8 1fvf-a1-m1-cA_1fvf-a1-m1-cB
6 1fvf-a1-m1-cA 543 46 0.2807 0.0295 0.3478 1.8 1fvf-a1-m1-cA_1fvf-a1-m1-cB
7 4fdi-a1-m1-cB 491 22 0.1754 0.0204 0.4545 4.5 4fdi-a1-m1-cB_4fdi-a1-m1-cA
8 4fdi-a1-m1-cA 493 22 0.1754 0.0203 0.4545 4.5 4fdi-a1-m1-cB_4fdi-a1-m1-cA
9 6x1i-a1-m6-cA 171 41 0.2105 0.0702 0.2927 4.5 6x1i-a1-m5-cA_6x1i-a1-m6-cA
10 6x1i-a1-m5-cA 171 41 0.2105 0.0702 0.2927 4.5 6x1i-a1-m5-cA_6x1i-a1-m6-cA
11 3r84-a19-m1-cC 79 27 0.2105 0.1519 0.4444 7.2 3r84-a19-m1-cC_3r84-a19-m1-cA
12 3r84-a19-m1-cA 80 27 0.2105 0.1500 0.4444 7.9 3r84-a19-m1-cC_3r84-a19-m1-cA
13 2xro-a1-m1-cE 239 37 0.2281 0.0544 0.3514 8.8 2xro-a1-m1-cE_2xro-a1-m1-cF
14 2xro-a1-m1-cA 239 37 0.2281 0.0544 0.3514 8.8 2xro-a1-m1-cA_2xro-a1-m1-cF
15 2xrn-a1-m2-cA 239 37 0.2281 0.0544 0.3514 8.8 2xrn-a1-m2-cA_2xrn-a1-m2-cB
16 2xro-a1-m1-cF 240 37 0.2281 0.0542 0.3514 9.0 2xro-a1-m1-cA_2xro-a1-m1-cF, 2xro-a1-m1-cB_2xro-a1-m1-cF, 2xro-a1-m1-cE_2xro-a1-m1-cF
17 2xro-a1-m1-cB 240 37 0.2281 0.0542 0.3514 9.0 2xro-a1-m1-cB_2xro-a1-m1-cF
18 2xrn-a1-m2-cB 241 37 0.2281 0.0539 0.3514 9.0 2xrn-a1-m1-cB_2xrn-a1-m2-cB, 2xrn-a1-m2-cA_2xrn-a1-m2-cB
19 2xrn-a1-m1-cB 241 37 0.2281 0.0539 0.3514 9.0 2xrn-a1-m1-cB_2xrn-a1-m2-cB

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Reference:
Jacob Schwartz et al.

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