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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
AMGSDASKVVTRGPGLSQAFVGQKNSFTVDCSKAGTNMMMVGVHGPKTPCEEVYVKHMGN
RVYNVTYTVKEKGDYILIVKWGDESVPGSPFKVKVP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1v05-a1-m2-cA 96 96 1.0000 1.0000 1.0000 5.26e-68 1v05-a1-m1-cA_1v05-a1-m2-cA
2 1v05-a1-m1-cA 96 96 1.0000 1.0000 1.0000 5.26e-68 1v05-a1-m1-cA_1v05-a1-m2-cA
3 3cnk-a1-m1-cB 89 89 0.6250 0.6742 0.6742 5.38e-45 3cnk-a1-m1-cA_3cnk-a1-m1-cB
4 3cnk-a1-m1-cA 89 89 0.6250 0.6742 0.6742 5.38e-45 3cnk-a1-m1-cA_3cnk-a1-m1-cB
5 2w0p-a1-m1-cA 93 90 0.3333 0.3441 0.3556 3.68e-11 2w0p-a1-m1-cA_2w0p-a1-m1-cB
6 2w0p-a1-m1-cB 94 90 0.3333 0.3404 0.3556 4.15e-11 2w0p-a1-m1-cA_2w0p-a1-m1-cB
7 7ouu-a1-m1-cA 202 91 0.2917 0.1386 0.3077 7.32e-11 7ouu-a1-m1-cA_7ouu-a1-m1-cB
8 7ouu-a1-m1-cA 202 73 0.2396 0.1139 0.3151 1.91e-07 7ouu-a1-m1-cA_7ouu-a1-m1-cB
9 7ouu-a1-m1-cB 204 91 0.2917 0.1373 0.3077 7.48e-11 7ouu-a1-m1-cA_7ouu-a1-m1-cB
10 7ouu-a1-m1-cB 204 73 0.2396 0.1127 0.3151 1.88e-07 7ouu-a1-m1-cA_7ouu-a1-m1-cB
11 2jf1-a1-m3-cA 87 90 0.3438 0.3793 0.3667 1.52e-10 2jf1-a1-m2-cA_2jf1-a1-m3-cA
12 2jf1-a1-m2-cA 87 90 0.3438 0.3793 0.3667 1.52e-10 2jf1-a1-m2-cA_2jf1-a1-m3-cA
13 7ouv-a1-m1-cA 204 91 0.2812 0.1324 0.2967 5.50e-10 7ouv-a1-m1-cB_7ouv-a1-m1-cA
14 7ouv-a1-m1-cA 204 73 0.2396 0.1127 0.3151 1.94e-07 7ouv-a1-m1-cB_7ouv-a1-m1-cA
15 7ouv-a1-m1-cB 202 91 0.2812 0.1337 0.2967 5.68e-10 7ouv-a1-m1-cB_7ouv-a1-m1-cA
16 7ouv-a1-m1-cB 202 73 0.2396 0.1139 0.3151 1.91e-07 7ouv-a1-m1-cB_7ouv-a1-m1-cA
17 7vzo-a1-m1-cB 191 90 0.3125 0.1571 0.3333 2.61e-09 7vzo-a1-m1-cA_7vzo-a1-m1-cB
18 7vzo-a1-m1-cB 191 45 0.1458 0.0733 0.3111 0.22 7vzo-a1-m1-cA_7vzo-a1-m1-cB
19 7vzo-a1-m1-cA 191 90 0.3125 0.1571 0.3333 2.61e-09 7vzo-a1-m1-cA_7vzo-a1-m1-cB
20 7vzo-a1-m1-cA 191 45 0.1458 0.0733 0.3111 0.22 7vzo-a1-m1-cA_7vzo-a1-m1-cB
21 3elb-a2-m2-cA 297 60 0.1979 0.0640 0.3167 0.23 3elb-a2-m1-cA_3elb-a2-m2-cA
22 3elb-a2-m1-cA 297 60 0.1979 0.0640 0.3167 0.23 3elb-a2-m1-cA_3elb-a2-m2-cA
23 4uu2-a1-m1-cB 167 41 0.1250 0.0719 0.2927 2.2 4uu2-a1-m1-cA_4uu2-a1-m1-cB
24 4uu2-a1-m1-cA 167 41 0.1250 0.0719 0.2927 2.2 4uu2-a1-m1-cA_4uu2-a1-m1-cB
25 2zr8-a1-m2-cA 319 40 0.1458 0.0439 0.3500 3.0 2zr8-a1-m1-cA_2zr8-a1-m2-cA
26 2zr8-a1-m1-cA 319 40 0.1458 0.0439 0.3500 3.0 2zr8-a1-m1-cA_2zr8-a1-m2-cA
27 1wtc-a1-m2-cA 318 40 0.1458 0.0440 0.3500 3.1 1wtc-a1-m1-cA_1wtc-a1-m2-cA
28 1wtc-a1-m1-cA 318 40 0.1458 0.0440 0.3500 3.1 1wtc-a1-m1-cA_1wtc-a1-m2-cA
29 1ibg-a2-m2-cH 217 41 0.1354 0.0599 0.3171 4.3 1ibg-a2-m2-cH_1ibg-a2-m1-cH
30 1ibg-a2-m1-cH 217 41 0.1354 0.0599 0.3171 4.3 1ibg-a2-m2-cH_1ibg-a2-m1-cH
31 7yxx-a1-m1-cC 1741 40 0.1146 0.0063 0.2750 9.4 7yxx-a1-m1-cC_7yxx-a1-m1-cA, 7yxx-a1-m1-cC_7yxx-a1-m1-cB
32 7yxx-a1-m1-cB 1754 40 0.1146 0.0063 0.2750 9.4 7yxx-a1-m1-cC_7yxx-a1-m1-cB
33 7yxx-a1-m1-cA 1754 40 0.1146 0.0063 0.2750 9.4 7yxx-a1-m1-cC_7yxx-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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