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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=98)
AMLYLEDYLEMIEQLPMDLRDRFTEMREMDLQVQNAMDQLEQRVSEFFMNAKKNKPEWRE
EQMASIKKDYYKALEDADEKVQLANQIYDLVDRHLRKL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 8cok-a1-m1-cB 101 98 1.0000 0.9703 1.0000 5.51e-67 8cok-a1-m1-cA_8cok-a1-m1-cB
2 8cok-a1-m1-cA 98 98 1.0000 1.0000 1.0000 6.38e-67 8cok-a1-m1-cA_8cok-a1-m1-cB
3 5mto-a1-m1-cB 107 96 0.3776 0.3458 0.3854 1.31e-17 5mto-a1-m1-cA_5mto-a1-m1-cB
4 5mto-a1-m1-cA 107 96 0.3776 0.3458 0.3854 1.31e-17 5mto-a1-m1-cA_5mto-a1-m1-cB
5 4afl-a3-m1-cE 96 95 0.3367 0.3438 0.3474 1.25e-08 4afl-a3-m1-cD_4afl-a3-m1-cE
6 4afl-a3-m1-cD 90 98 0.3469 0.3778 0.3469 2.41e-08 4afl-a3-m1-cD_4afl-a3-m1-cE
7 4q86-a1-m1-cB 583 24 0.1327 0.0223 0.5417 0.77 4q86-a1-m1-cA_4q86-a1-m1-cB
8 4q86-a1-m1-cA 582 24 0.1327 0.0223 0.5417 0.81 4q86-a1-m1-cA_4q86-a1-m1-cB
9 4kyn-a2-m1-cD 172 49 0.1837 0.1047 0.3673 0.88 4kyn-a2-m1-cB_4kyn-a2-m1-cD
10 4kyn-a2-m1-cB 172 49 0.1837 0.1047 0.3673 0.88 4kyn-a2-m1-cB_4kyn-a2-m1-cD
11 6rla-a1-m1-cB 2750 34 0.1020 0.0036 0.2941 1.8 6rla-a1-m1-cA_6rla-a1-m1-cB
12 6rla-a1-m1-cA 2750 34 0.1020 0.0036 0.2941 1.8 6rla-a1-m1-cA_6rla-a1-m1-cB
13 7jqe-a1-m2-cA 351 87 0.2245 0.0627 0.2529 2.1 7jqe-a1-m1-cA_7jqe-a1-m2-cA
14 7jqe-a1-m1-cA 351 87 0.2245 0.0627 0.2529 2.1 7jqe-a1-m1-cA_7jqe-a1-m2-cA
15 1ycy-a2-m2-cD 60 42 0.1224 0.2000 0.2857 2.9 1ycy-a2-m2-cC_1ycy-a2-m2-cD
16 1ycy-a2-m2-cC 60 42 0.1224 0.2000 0.2857 2.9 1ycy-a2-m2-cC_1ycy-a2-m2-cD
17 1ycy-a1-m4-cD 60 42 0.1224 0.2000 0.2857 2.9 1ycy-a1-m2-cC_1ycy-a1-m4-cD
18 1ycy-a1-m2-cC 60 42 0.1224 0.2000 0.2857 2.9 1ycy-a1-m2-cC_1ycy-a1-m4-cD
19 3lxu-a1-m2-cX 1192 63 0.1837 0.0151 0.2857 4.2 3lxu-a1-m1-cX_3lxu-a1-m2-cX
20 3lxu-a1-m1-cX 1192 63 0.1837 0.0151 0.2857 4.2 3lxu-a1-m1-cX_3lxu-a1-m2-cX
21 4dnx-a1-m1-cB 396 54 0.1633 0.0404 0.2963 5.4 4dnx-a1-m1-cA_4dnx-a1-m1-cB
22 4dnx-a1-m1-cA 396 54 0.1633 0.0404 0.2963 5.4 4dnx-a1-m1-cA_4dnx-a1-m1-cB
23 6fia-a2-m1-cF 88 29 0.1224 0.1364 0.4138 6.0 6fia-a2-m1-cE_6fia-a2-m1-cF
24 6fia-a2-m1-cE 88 29 0.1224 0.1364 0.4138 6.0 6fia-a2-m1-cE_6fia-a2-m1-cF
25 5jhf-a1-m1-cF 405 39 0.1224 0.0296 0.3077 8.1 5jhf-a1-m1-cC_5jhf-a1-m1-cF
26 7avr-a2-m1-cF 298 31 0.1020 0.0336 0.3226 8.1 7avr-a2-m1-cF_7avr-a2-m1-cH
27 7avr-a2-m1-cH 299 31 0.1020 0.0334 0.3226 8.3 7avr-a2-m1-cE_7avr-a2-m1-cH, 7avr-a2-m1-cF_7avr-a2-m1-cH
28 7avr-a2-m1-cE 298 31 0.1020 0.0336 0.3226 8.4 7avr-a2-m1-cE_7avr-a2-m1-cH
29 5tdx-a2-m1-cC 265 34 0.1327 0.0491 0.3824 9.1 5tdx-a2-m1-cD_5tdx-a2-m1-cC
30 5tdx-a2-m1-cD 260 34 0.1327 0.0500 0.3824 9.7 5tdx-a2-m1-cD_5tdx-a2-m1-cC

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Reference:
Jacob Schwartz et al.

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