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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=87)
APLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLEDLDRN
KDQEVNFQEYVTFLGALALIYNEALKG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1k8u-a1-m2-cA 87 87 1.0000 1.0000 1.0000 1.51e-58 1k8u-a1-m1-cA_1k8u-a1-m2-cA
2 1k8u-a1-m1-cA 87 87 1.0000 1.0000 1.0000 1.51e-58 1k8u-a1-m1-cA_1k8u-a1-m2-cA
3 4ybh-a1-m2-cB 89 88 0.9885 0.9663 0.9773 3.03e-56 4ybh-a1-m1-cB_4ybh-a1-m2-cB
4 4ybh-a1-m1-cB 89 88 0.9885 0.9663 0.9773 3.03e-56 4ybh-a1-m1-cB_4ybh-a1-m2-cB
5 1k9k-a2-m2-cB 89 88 0.9885 0.9663 0.9773 3.03e-56 1k9k-a2-m1-cA_1k9k-a2-m2-cB, 1k9k-a2-m1-cB_1k9k-a2-m2-cB, 1k9k-a2-m2-cA_1k9k-a2-m2-cB
6 1k9k-a2-m2-cA 89 88 0.9885 0.9663 0.9773 3.03e-56 1k9k-a2-m2-cA_1k9k-a2-m2-cB
7 1k9k-a2-m1-cB 89 88 0.9885 0.9663 0.9773 3.03e-56 1k9k-a2-m1-cB_1k9k-a2-m2-cB
8 1k9k-a2-m1-cA 89 88 0.9885 0.9663 0.9773 3.03e-56 1k9k-a2-m1-cA_1k9k-a2-m2-cB
9 4p2y-a3-m3-cB 88 87 0.9425 0.9318 0.9425 1.68e-53 4p2y-a3-m1-cB_4p2y-a3-m3-cB
10 4p2y-a3-m1-cB 88 87 0.9425 0.9318 0.9425 1.68e-53 4p2y-a3-m1-cB_4p2y-a3-m3-cB
11 2cnp-a1-m1-cB 90 88 0.8966 0.8667 0.8864 8.85e-53 2cnp-a1-m1-cA_2cnp-a1-m1-cB
12 2cnp-a1-m1-cA 90 88 0.8966 0.8667 0.8864 8.85e-53 2cnp-a1-m1-cA_2cnp-a1-m1-cB
13 1jwd-a1-m1-cB 90 88 0.8966 0.8667 0.8864 8.85e-53 1jwd-a1-m1-cA_1jwd-a1-m1-cB
14 1jwd-a1-m1-cA 90 88 0.8966 0.8667 0.8864 8.85e-53 1jwd-a1-m1-cA_1jwd-a1-m1-cB
15 1cnp-a1-m1-cB 90 88 0.8966 0.8667 0.8864 8.85e-53 1cnp-a1-m1-cA_1cnp-a1-m1-cB
16 1cnp-a1-m1-cA 90 88 0.8966 0.8667 0.8864 8.85e-53 1cnp-a1-m1-cA_1cnp-a1-m1-cB
17 1a03-a1-m1-cB 90 88 0.8966 0.8667 0.8864 8.85e-53 1a03-a1-m1-cA_1a03-a1-m1-cB
18 1a03-a1-m1-cA 90 88 0.8966 0.8667 0.8864 8.85e-53 1a03-a1-m1-cA_1a03-a1-m1-cB
19 2kax-a1-m1-cB 92 83 0.4828 0.4565 0.5060 8.63e-26 2kax-a1-m1-cA_2kax-a1-m1-cB
20 2kax-a1-m1-cA 92 83 0.4828 0.4565 0.5060 8.63e-26 2kax-a1-m1-cA_2kax-a1-m1-cB
21 6wn7-a3-m1-cE 91 84 0.5057 0.4835 0.5238 7.66e-25 6wn7-a3-m1-cF_6wn7-a3-m1-cE
22 6wn7-a3-m1-cF 88 84 0.4943 0.4886 0.5119 1.05e-24 6wn7-a3-m1-cF_6wn7-a3-m1-cE
23 2rgi-a1-m1-cA 93 90 0.4713 0.4409 0.4556 2.89e-21 2rgi-a1-m1-cB_2rgi-a1-m1-cA
24 2rgi-a1-m1-cB 92 90 0.4713 0.4457 0.4556 3.39e-21 2rgi-a1-m1-cB_2rgi-a1-m1-cA
25 4duq-a1-m1-cA 88 86 0.4598 0.4545 0.4651 2.49e-20 4duq-a1-m1-cA_4duq-a1-m1-cB
26 4duq-a1-m1-cB 90 86 0.4598 0.4444 0.4651 2.51e-20 4duq-a1-m1-cA_4duq-a1-m1-cB
27 5k89-a2-m3-cH 89 82 0.4598 0.4494 0.4878 3.84e-19 5k89-a2-m1-cH_5k89-a2-m3-cH
28 5k89-a2-m1-cH 89 82 0.4598 0.4494 0.4878 3.84e-19 5k89-a2-m1-cH_5k89-a2-m3-cH
29 3nsl-a3-m1-cC 93 88 0.4483 0.4194 0.4432 5.30e-19 3nsl-a3-m1-cD_3nsl-a3-m1-cC
30 3nsl-a3-m1-cD 92 88 0.4483 0.4239 0.4432 6.08e-19 3nsl-a3-m1-cD_3nsl-a3-m1-cC
31 2llt-a1-m1-cB 92 85 0.4598 0.4348 0.4706 3.93e-18 2llt-a1-m1-cA_2llt-a1-m1-cB
32 2llt-a1-m1-cA 92 85 0.4598 0.4348 0.4706 3.93e-18 2llt-a1-m1-cA_2llt-a1-m1-cB
33 2jpt-a1-m1-cB 93 85 0.4483 0.4194 0.4588 8.86e-18 2jpt-a1-m1-cA_2jpt-a1-m1-cB
34 2jpt-a1-m1-cA 93 85 0.4483 0.4194 0.4588 8.86e-18 2jpt-a1-m1-cA_2jpt-a1-m1-cB
35 1k2h-a1-m1-cB 93 85 0.4368 0.4086 0.4471 1.60e-17 1k2h-a1-m1-cA_1k2h-a1-m1-cB
36 1k2h-a1-m1-cA 93 85 0.4368 0.4086 0.4471 1.60e-17 1k2h-a1-m1-cA_1k2h-a1-m1-cB
37 2y5i-a3-m1-cE 97 86 0.4368 0.3918 0.4419 1.99e-17 2y5i-a3-m1-cE_2y5i-a3-m1-cF
38 2y5i-a3-m1-cF 98 86 0.4368 0.3878 0.4419 2.11e-17 2y5i-a3-m1-cE_2y5i-a3-m1-cF
39 1j55-a1-m2-cA 88 75 0.3678 0.3636 0.4267 2.82e-15 1j55-a1-m1-cA_1j55-a1-m2-cA
40 1j55-a1-m1-cA 88 75 0.3678 0.3636 0.4267 2.82e-15 1j55-a1-m1-cA_1j55-a1-m2-cA
41 5hyd-a2-m1-cC 94 84 0.4023 0.3723 0.4167 4.69e-15 5hyd-a2-m1-cC_5hyd-a2-m1-cD
42 5hyd-a2-m1-cD 96 84 0.4023 0.3646 0.4167 5.09e-15 5hyd-a2-m1-cC_5hyd-a2-m1-cD
43 2wcf-a3-m1-cF 88 71 0.3908 0.3864 0.4789 7.88e-11 2wcf-a3-m1-cF_2wcf-a3-m1-cE
44 6zdy-a1-m2-cA 108 91 0.3333 0.2685 0.3187 1.13e-10 6zdy-a1-m1-cA_6zdy-a1-m2-cA
45 6zdy-a1-m1-cA 108 91 0.3333 0.2685 0.3187 1.13e-10 6zdy-a1-m1-cA_6zdy-a1-m2-cA
46 1nsh-a1-m1-cB 101 85 0.3333 0.2871 0.3412 1.45e-10 1nsh-a1-m1-cA_1nsh-a1-m1-cB
47 1nsh-a1-m1-cA 101 85 0.3333 0.2871 0.3412 1.45e-10 1nsh-a1-m1-cA_1nsh-a1-m1-cB
48 1gqm-a2-m1-cI 87 73 0.4023 0.4023 0.4795 1.66e-10 1gqm-a2-m1-cG_1gqm-a2-m1-cI
49 1gqm-a2-m1-cG 87 73 0.4023 0.4023 0.4795 1.66e-10 1gqm-a2-m1-cG_1gqm-a2-m1-cI
50 1gqm-a1-m1-cD 87 73 0.4023 0.4023 0.4795 1.66e-10 1gqm-a1-m1-cC_1gqm-a1-m1-cD
51 1gqm-a1-m1-cC 87 73 0.4023 0.4023 0.4795 1.66e-10 1gqm-a1-m1-cC_1gqm-a1-m1-cD
52 2wcf-a3-m1-cE 90 73 0.4023 0.3889 0.4795 1.67e-10 2wcf-a3-m1-cF_2wcf-a3-m1-cE
53 2wcb-a1-m1-cB 91 73 0.4023 0.3846 0.4795 1.94e-10 2wcb-a1-m1-cB_2wcb-a1-m1-cA
54 2wcb-a1-m1-cA 92 73 0.4023 0.3804 0.4795 2.19e-10 2wcb-a1-m1-cB_2wcb-a1-m1-cA
55 2luc-a1-m1-cB 105 85 0.3103 0.2571 0.3176 3.29e-10 2luc-a1-m1-cA_2luc-a1-m1-cB
56 2luc-a1-m1-cA 105 85 0.3103 0.2571 0.3176 3.29e-10 2luc-a1-m1-cA_2luc-a1-m1-cB
57 2cxj-a1-m1-cB 98 76 0.3218 0.2857 0.3684 3.37e-08 2cxj-a1-m1-cA_2cxj-a1-m1-cB
58 2cxj-a1-m1-cA 98 76 0.3218 0.2857 0.3684 3.37e-08 2cxj-a1-m1-cA_2cxj-a1-m1-cB
59 2egd-a1-m1-cA 86 76 0.2989 0.3023 0.3421 1.19e-07 2egd-a1-m1-cA_2egd-a1-m1-cB
60 1yut-a1-m1-cB 98 76 0.2989 0.2653 0.3421 1.35e-07 1yut-a1-m1-cA_1yut-a1-m1-cB
61 1yut-a1-m1-cA 98 76 0.2989 0.2653 0.3421 1.35e-07 1yut-a1-m1-cA_1yut-a1-m1-cB
62 1yus-a1-m1-cB 98 76 0.2989 0.2653 0.3421 1.35e-07 1yus-a1-m1-cA_1yus-a1-m1-cB
63 1yus-a1-m1-cA 98 76 0.2989 0.2653 0.3421 1.35e-07 1yus-a1-m1-cA_1yus-a1-m1-cB
64 1qls-a1-m2-cA 95 85 0.2874 0.2632 0.2941 1.63e-07 1qls-a1-m1-cA_1qls-a1-m2-cA
65 1qls-a1-m1-cA 95 85 0.2874 0.2632 0.2941 1.63e-07 1qls-a1-m1-cA_1qls-a1-m2-cA
66 2ki6-a1-m1-cC 96 76 0.2989 0.2708 0.3421 1.77e-07 2ki6-a1-m1-cC_2ki6-a1-m1-cD
67 2ki6-a1-m1-cD 97 76 0.2989 0.2680 0.3421 2.05e-07 2ki6-a1-m1-cC_2ki6-a1-m1-cD
68 2egd-a1-m1-cB 91 76 0.2989 0.2857 0.3421 2.23e-07 2egd-a1-m1-cA_2egd-a1-m1-cB
69 3nxa-a2-m1-cC 97 83 0.3218 0.2887 0.3373 1.14e-05 3nxa-a2-m1-cD_3nxa-a2-m1-cC
70 1qx2-a5-m1-cB 74 68 0.2414 0.2838 0.3088 1.52e-05 1qx2-a5-m1-cB_1qx2-a5-m1-cA
71 1qx2-a3-m1-cB 74 68 0.2414 0.2838 0.3088 1.52e-05 1qx2-a3-m1-cB_1qx2-a3-m2-cA
72 1qx2-a5-m1-cA 75 68 0.2414 0.2800 0.3088 1.69e-05 1qx2-a5-m1-cB_1qx2-a5-m1-cA
73 1qx2-a3-m2-cA 75 68 0.2414 0.2800 0.3088 1.69e-05 1qx2-a3-m1-cB_1qx2-a3-m2-cA
74 1ht9-a1-m1-cB 76 61 0.3103 0.3553 0.4426 0.003 1ht9-a1-m1-cA_1ht9-a1-m1-cB
75 1ht9-a1-m1-cA 76 61 0.3103 0.3553 0.4426 0.003 1ht9-a1-m1-cA_1ht9-a1-m1-cB
76 3nxa-a2-m1-cD 74 77 0.2529 0.2973 0.2857 0.19 3nxa-a2-m1-cD_3nxa-a2-m1-cC
77 1bjt-a1-m2-cA 679 37 0.1724 0.0221 0.4054 0.30 1bjt-a1-m1-cA_1bjt-a1-m2-cA
78 1bjt-a1-m1-cA 679 37 0.1724 0.0221 0.4054 0.30 1bjt-a1-m1-cA_1bjt-a1-m2-cA
79 4gfh-a1-m1-cF 1097 37 0.1724 0.0137 0.4054 0.31 4gfh-a1-m1-cF_4gfh-a1-m1-cA
80 4gfh-a1-m1-cA 1101 37 0.1724 0.0136 0.4054 0.31 4gfh-a1-m1-cF_4gfh-a1-m1-cA
81 1bgw-a1-m2-cA 679 37 0.1724 0.0221 0.4054 0.35 1bgw-a1-m1-cA_1bgw-a1-m2-cA
82 1bgw-a1-m1-cA 679 37 0.1724 0.0221 0.4054 0.35 1bgw-a1-m1-cA_1bgw-a1-m2-cA
83 2rgr-a1-m2-cA 721 37 0.1724 0.0208 0.4054 0.37 2rgr-a1-m1-cA_2rgr-a1-m2-cA
84 2rgr-a1-m1-cA 721 37 0.1724 0.0208 0.4054 0.37 2rgr-a1-m1-cA_2rgr-a1-m2-cA
85 6k31-a1-m1-cA 1093 52 0.2069 0.0165 0.3462 0.41 6k31-a1-m1-cB_6k31-a1-m1-cA
86 6k31-a1-m1-cB 1092 52 0.2069 0.0165 0.3462 0.42 6k31-a1-m1-cB_6k31-a1-m1-cA
87 1k9u-a1-m1-cB 76 64 0.1954 0.2237 0.2656 0.68 1k9u-a1-m1-cA_1k9u-a1-m1-cB
88 1k9u-a1-m1-cA 76 64 0.1954 0.2237 0.2656 0.68 1k9u-a1-m1-cA_1k9u-a1-m1-cB
89 2o3o-a2-m1-cB 233 69 0.2414 0.0901 0.3043 1.1 2o3o-a2-m1-cB_2o3o-a2-m1-cD
90 2o3o-a2-m1-cD 235 69 0.2414 0.0894 0.3043 1.1 2o3o-a2-m1-cB_2o3o-a2-m1-cD
91 3hyh-a3-m1-cB 233 57 0.1609 0.0601 0.2456 1.1 3hyh-a3-m1-cB_3hyh-a3-m1-cA
92 3gn4-a1-m1-cD 145 49 0.1724 0.1034 0.3061 2.2 3gn4-a1-m1-cB_3gn4-a1-m1-cD
93 3gn4-a1-m1-cB 145 49 0.1724 0.1034 0.3061 2.2 3gn4-a1-m1-cB_3gn4-a1-m1-cD
94 2f2p-a2-m2-cB 169 53 0.1839 0.0947 0.3019 2.9 2f2p-a2-m1-cB_2f2p-a2-m2-cB, 2f2p-a2-m2-cA_2f2p-a2-m2-cB
95 2f2p-a2-m2-cA 169 53 0.1839 0.0947 0.3019 2.9 2f2p-a2-m2-cA_2f2p-a2-m2-cB
96 2f2p-a2-m1-cB 169 53 0.1839 0.0947 0.3019 2.9 2f2p-a2-m1-cB_2f2p-a2-m2-cB
97 4g56-a1-m2-cC 590 82 0.2529 0.0373 0.2683 3.2 4g56-a1-m2-cC_4g56-a1-m1-cA, 4g56-a1-m2-cC_4g56-a1-m2-cA
98 4g56-a1-m2-cA 604 82 0.2529 0.0364 0.2683 3.2 4g56-a1-m2-cC_4g56-a1-m2-cA
99 4g56-a1-m1-cA 604 82 0.2529 0.0364 0.2683 3.2 4g56-a1-m2-cC_4g56-a1-m1-cA
100 2ocz-a1-m2-cA 209 47 0.1609 0.0670 0.2979 4.7 2ocz-a1-m1-cA_2ocz-a1-m2-cA
101 2ocz-a1-m1-cA 209 47 0.1609 0.0670 0.2979 4.7 2ocz-a1-m1-cA_2ocz-a1-m2-cA
102 4aqj-a1-m2-cA 96 81 0.2874 0.2604 0.3086 5.3 4aqj-a1-m1-cA_4aqj-a1-m2-cA
103 4aqj-a1-m1-cA 96 81 0.2874 0.2604 0.3086 5.3 4aqj-a1-m1-cA_4aqj-a1-m2-cA
104 7mzy-a1-m1-cB 302 27 0.1149 0.0331 0.3704 5.5 7mzy-a1-m1-cB_7mzy-a1-m1-cA
105 7mzy-a1-m1-cA 307 27 0.1149 0.0326 0.3704 5.5 7mzy-a1-m1-cB_7mzy-a1-m1-cA
106 7nwz-a2-m1-cB 309 27 0.1149 0.0324 0.3704 5.5 7nwz-a2-m1-cA_7nwz-a2-m1-cB
107 7nwz-a2-m1-cA 309 27 0.1149 0.0324 0.3704 5.5 7nwz-a2-m1-cA_7nwz-a2-m1-cB
108 7ls0-a2-m1-cD 361 27 0.1149 0.0277 0.3704 5.6 7ls0-a2-m1-cD_7ls0-a2-m1-cB
109 7ls0-a2-m1-cB 362 27 0.1149 0.0276 0.3704 5.6 7ls0-a2-m1-cD_7ls0-a2-m1-cB
110 4p5w-a1-m1-cA 312 70 0.2184 0.0609 0.2714 7.1 4p5w-a1-m1-cB_4p5w-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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