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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
ASRGVNKVILVGNLGQDPEVRYAVANITLATSESWEQTEWHRVVLFGKLAEVASEYLRKG
SQVYIEGQLRTRKWTDQSDRYTTEVVVNVGGTMQML

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1sru-a1-m1-cC 96 96 1.0000 1.0000 1.0000 8.10e-67 1sru-a1-m1-cC_1sru-a1-m1-cA
2 1sru-a1-m1-cD 101 101 1.0000 0.9505 0.9505 2.83e-64 1sru-a1-m1-cA_1sru-a1-m1-cD
3 1sru-a1-m1-cA 100 101 0.9896 0.9500 0.9406 1.02e-61 1sru-a1-m1-cA_1sru-a1-m1-cD, 1sru-a1-m1-cC_1sru-a1-m1-cA
4 4mz9-a1-m1-cD 114 112 1.0000 0.8421 0.8571 3.25e-59 4mz9-a1-m1-cB_4mz9-a1-m1-cD, 4mz9-a1-m1-cC_4mz9-a1-m1-cD
5 4mz9-a1-m1-cC 114 112 1.0000 0.8421 0.8571 3.25e-59 4mz9-a1-m1-cB_4mz9-a1-m1-cC, 4mz9-a1-m1-cC_4mz9-a1-m1-cD
6 4mz9-a1-m1-cB 114 112 1.0000 0.8421 0.8571 3.25e-59 4mz9-a1-m1-cB_4mz9-a1-m1-cC, 4mz9-a1-m1-cB_4mz9-a1-m1-cD
7 1kaw-a1-m1-cD 96 97 0.9688 0.9688 0.9588 1.00e-58 1kaw-a1-m1-cC_1kaw-a1-m1-cD
8 1kaw-a1-m1-cC 96 97 0.9688 0.9688 0.9588 1.00e-58 1kaw-a1-m1-cA_1kaw-a1-m1-cC, 1kaw-a1-m1-cC_1kaw-a1-m1-cD
9 1kaw-a1-m1-cA 96 97 0.9688 0.9688 0.9588 1.00e-58 1kaw-a1-m1-cA_1kaw-a1-m1-cC
10 7f25-a1-m1-cB 106 105 0.8958 0.8113 0.8190 1.24e-52 7f25-a1-m1-cA_7f25-a1-m1-cB
11 7f25-a1-m1-cA 106 105 0.8958 0.8113 0.8190 1.24e-52 7f25-a1-m1-cA_7f25-a1-m1-cB
12 3tqy-a1-m1-cD 96 93 0.6562 0.6562 0.6774 1.78e-40 3tqy-a1-m1-cD_3tqy-a1-m1-cC
13 3tqy-a1-m1-cC 106 102 0.6667 0.6038 0.6275 2.65e-40 3tqy-a1-m1-cD_3tqy-a1-m1-cC
14 5odn-a1-m1-cC 102 91 0.5625 0.5294 0.5934 1.17e-33 5odn-a1-m1-cC_5odn-a1-m1-cF
15 3pgz-a1-m1-cA 109 105 0.6146 0.5413 0.5619 1.26e-32 3pgz-a1-m1-cA_3pgz-a1-m1-cB
16 5odn-a1-m1-cD 106 91 0.5625 0.5094 0.5934 2.07e-32 5odn-a1-m1-cA_5odn-a1-m1-cD
17 5odn-a1-m1-cF 105 95 0.5625 0.5143 0.5684 3.59e-32 5odn-a1-m1-cC_5odn-a1-m1-cF
18 5odn-a1-m1-cH 99 91 0.5625 0.5455 0.5934 3.68e-32 5odn-a1-m1-cA_5odn-a1-m1-cH
19 5odn-a1-m1-cA 99 91 0.5625 0.5455 0.5934 3.68e-32 5odn-a1-m1-cA_5odn-a1-m1-cD, 5odn-a1-m1-cA_5odn-a1-m1-cH
20 3pgz-a1-m1-cB 114 110 0.6146 0.5175 0.5364 6.54e-32 3pgz-a1-m1-cA_3pgz-a1-m1-cB
21 5odn-a1-m1-cE 105 97 0.5625 0.5143 0.5567 3.35e-31 5odn-a1-m1-cG_5odn-a1-m1-cE
22 5odn-a1-m1-cG 102 97 0.5625 0.5294 0.5567 5.80e-31 5odn-a1-m1-cG_5odn-a1-m1-cE
23 5odp-a1-m1-cA 99 87 0.4896 0.4747 0.5402 7.49e-27 5odp-a1-m1-cA_5odp-a1-m1-cG
24 5odp-a1-m1-cG 100 83 0.4688 0.4500 0.5422 8.64e-26 5odp-a1-m1-cA_5odp-a1-m1-cG
25 3lgj-a1-m1-cB 97 89 0.4792 0.4742 0.5169 2.03e-22 3lgj-a1-m1-cA_3lgj-a1-m1-cB
26 3lgj-a1-m1-cA 95 89 0.4583 0.4632 0.4944 5.81e-21 3lgj-a1-m1-cA_3lgj-a1-m1-cB
27 1z9f-a2-m4-cA 89 84 0.3854 0.4157 0.4405 5.18e-18 1z9f-a2-m1-cA_1z9f-a2-m4-cA, 1z9f-a2-m3-cA_1z9f-a2-m4-cA
28 1z9f-a2-m3-cA 89 84 0.3854 0.4157 0.4405 5.18e-18 1z9f-a2-m3-cA_1z9f-a2-m4-cA
29 1z9f-a2-m1-cA 89 84 0.3854 0.4157 0.4405 5.18e-18 1z9f-a2-m1-cA_1z9f-a2-m4-cA
30 3ulp-a1-m1-cA 114 100 0.3438 0.2895 0.3300 1.75e-17 3ulp-a1-m1-cD_3ulp-a1-m1-cA
31 3ulp-a1-m1-cD 113 99 0.3542 0.3009 0.3434 2.44e-17 3ulp-a1-m1-cD_3ulp-a1-m1-cA, 3ulp-a1-m1-cD_3ulp-a1-m1-cB, 3ulp-a1-m1-cD_3ulp-a1-m1-cC
32 3ulp-a1-m1-cB 114 100 0.3542 0.2982 0.3400 3.07e-17 3ulp-a1-m1-cD_3ulp-a1-m1-cB
33 2dud-a2-m2-cA 95 80 0.3333 0.3368 0.4000 1.64e-16 2dud-a2-m2-cB_2dud-a2-m2-cA
34 2dud-a2-m1-cA 95 80 0.3333 0.3368 0.4000 1.64e-16 2dud-a2-m2-cB_2dud-a2-m1-cA
35 3ulp-a1-m1-cC 116 102 0.3438 0.2845 0.3235 3.22e-16 3ulp-a1-m1-cD_3ulp-a1-m1-cC
36 2dud-a2-m2-cB 92 78 0.3229 0.3370 0.3974 2.10e-15 2dud-a2-m2-cB_2dud-a2-m1-cA, 2dud-a2-m2-cB_2dud-a2-m2-cA
37 2vw9-a1-m2-cB 105 88 0.3750 0.3429 0.4091 2.49e-13 2vw9-a1-m1-cB_2vw9-a1-m2-cB
38 2vw9-a1-m1-cB 105 88 0.3750 0.3429 0.4091 2.49e-13 2vw9-a1-m1-cB_2vw9-a1-m2-cB
39 6bhx-a1-m1-cC 102 91 0.3438 0.3235 0.3626 3.18e-13 6bhx-a1-m1-cA_6bhx-a1-m1-cC
40 6bhw-a2-m1-cE 99 89 0.3438 0.3333 0.3708 4.40e-12 6bhw-a2-m1-cE_6bhw-a2-m1-cG, 6bhw-a2-m1-cF_6bhw-a2-m1-cE
41 6bhx-a1-m1-cA 98 78 0.3021 0.2959 0.3718 4.74e-12 6bhx-a1-m1-cA_6bhx-a1-m1-cC
42 6bhw-a2-m1-cF 96 88 0.3438 0.3438 0.3750 5.68e-12 6bhw-a2-m1-cF_6bhw-a2-m1-cE
43 2ihf-a1-m2-cA 205 94 0.3333 0.1561 0.3404 3.17e-11 2ihf-a1-m1-cA_2ihf-a1-m2-cA
44 2ihf-a1-m2-cA 205 89 0.3646 0.1707 0.3933 1.25e-06 2ihf-a1-m1-cA_2ihf-a1-m2-cA
45 2ihf-a1-m1-cA 205 94 0.3333 0.1561 0.3404 3.17e-11 2ihf-a1-m1-cA_2ihf-a1-m2-cA
46 2ihf-a1-m1-cA 205 89 0.3646 0.1707 0.3933 1.25e-06 2ihf-a1-m1-cA_2ihf-a1-m2-cA
47 5xgt-a1-m1-cA 104 97 0.3438 0.3173 0.3402 4.10e-11 5xgt-a1-m1-cA_5xgt-a1-m1-cB
48 5xgt-a1-m1-cB 105 97 0.3438 0.3143 0.3402 4.38e-11 5xgt-a1-m1-cA_5xgt-a1-m1-cB
49 6bhw-a2-m1-cG 101 91 0.3333 0.3168 0.3516 5.78e-11 6bhw-a2-m1-cE_6bhw-a2-m1-cG
50 7d8j-a1-m2-cA 112 97 0.3542 0.3036 0.3505 6.46e-11 7d8j-a1-m1-cA_7d8j-a1-m2-cA, 7d8j-a1-m2-cB_7d8j-a1-m2-cA
51 7d8j-a1-m1-cA 112 97 0.3542 0.3036 0.3505 6.46e-11 7d8j-a1-m1-cA_7d8j-a1-m2-cA, 7d8j-a1-m2-cB_7d8j-a1-m1-cA
52 3vdy-a1-m1-cA 101 94 0.3438 0.3267 0.3511 9.40e-11 3vdy-a1-m2-cB_3vdy-a1-m1-cA
53 7d8j-a1-m2-cB 98 95 0.3542 0.3469 0.3579 1.53e-10 7d8j-a1-m2-cB_7d8j-a1-m1-cA, 7d8j-a1-m2-cB_7d8j-a1-m2-cA
54 3vdy-a1-m2-cB 97 94 0.3438 0.3402 0.3511 7.29e-10 3vdy-a1-m1-cB_3vdy-a1-m2-cB, 3vdy-a1-m2-cB_3vdy-a1-m1-cA
55 3vdy-a1-m1-cB 97 94 0.3438 0.3402 0.3511 7.29e-10 3vdy-a1-m1-cB_3vdy-a1-m2-cB
56 2fxq-a1-m2-cA 197 83 0.3229 0.1574 0.3735 2.96e-09 2fxq-a1-m1-cA_2fxq-a1-m2-cA
57 2fxq-a1-m2-cA 197 90 0.3854 0.1878 0.4111 1.61e-08 2fxq-a1-m1-cA_2fxq-a1-m2-cA
58 2fxq-a1-m1-cA 197 83 0.3229 0.1574 0.3735 2.96e-09 2fxq-a1-m1-cA_2fxq-a1-m2-cA
59 2fxq-a1-m1-cA 197 90 0.3854 0.1878 0.4111 1.61e-08 2fxq-a1-m1-cA_2fxq-a1-m2-cA
60 1x3e-a1-m2-cA 110 101 0.3438 0.3000 0.3267 8.77e-09 1x3e-a1-m1-cA_1x3e-a1-m2-cA, 1x3e-a1-m2-cA_1x3e-a1-m2-cB
61 1x3e-a1-m1-cA 110 101 0.3438 0.3000 0.3267 8.77e-09 1x3e-a1-m1-cA_1x3e-a1-m2-cA
62 3a5u-a1-m2-cB 112 102 0.3438 0.2946 0.3235 1.34e-08 3a5u-a1-m2-cB_3a5u-a1-m2-cA
63 1se8-a1-m2-cA 205 79 0.3333 0.1561 0.4051 2.14e-08 1se8-a1-m1-cA_1se8-a1-m2-cA
64 1se8-a1-m2-cA 205 90 0.3125 0.1463 0.3333 2.21e-05 1se8-a1-m1-cA_1se8-a1-m2-cA
65 1se8-a1-m1-cA 205 79 0.3333 0.1561 0.4051 2.14e-08 1se8-a1-m1-cA_1se8-a1-m2-cA
66 1se8-a1-m1-cA 205 90 0.3125 0.1463 0.3333 2.21e-05 1se8-a1-m1-cA_1se8-a1-m2-cA
67 3udg-a2-m1-cB 214 79 0.3333 0.1495 0.4051 2.54e-08 3udg-a2-m1-cB_3udg-a2-m1-cC
68 3udg-a2-m1-cB 214 87 0.3125 0.1402 0.3448 4.68e-06 3udg-a2-m1-cB_3udg-a2-m1-cC
69 3udg-a2-m1-cC 214 86 0.3438 0.1542 0.3837 7.51e-08 3udg-a2-m1-cB_3udg-a2-m1-cC
70 3udg-a2-m1-cC 214 79 0.2917 0.1308 0.3544 1.47e-05 3udg-a2-m1-cB_3udg-a2-m1-cC
71 3a5u-a1-m2-cA 118 94 0.3229 0.2627 0.3298 7.51e-08 3a5u-a1-m1-cA_3a5u-a1-m2-cA, 3a5u-a1-m2-cB_3a5u-a1-m2-cA
72 3a5u-a1-m1-cA 118 94 0.3229 0.2627 0.3298 7.51e-08 3a5u-a1-m1-cA_3a5u-a1-m2-cA
73 7f5z-a1-m2-cA 117 99 0.3333 0.2735 0.3232 1.33e-07 7f5z-a1-m2-cA_7f5z-a1-m2-cB
74 1ue7-a1-m2-cB 98 74 0.2708 0.2653 0.3514 1.53e-07 1ue7-a1-m2-cB_1ue7-a1-m1-cA, 1ue7-a1-m2-cB_1ue7-a1-m2-cA
75 7f5z-a1-m2-cB 118 84 0.3021 0.2458 0.3452 3.33e-07 7f5z-a1-m1-cB_7f5z-a1-m2-cB, 7f5z-a1-m2-cA_7f5z-a1-m2-cB
76 7f5z-a1-m1-cB 118 84 0.3021 0.2458 0.3452 3.33e-07 7f5z-a1-m1-cB_7f5z-a1-m2-cB
77 7f5y-a1-m2-cA 109 77 0.2604 0.2294 0.3247 7.79e-07 7f5y-a1-m2-cA_7f5y-a1-m2-cB
78 1ue7-a2-m3-cD 95 74 0.2604 0.2632 0.3378 1.42e-06 1ue7-a2-m1-cD_1ue7-a2-m3-cD
79 1ue7-a2-m1-cD 95 74 0.2604 0.2632 0.3378 1.42e-06 1ue7-a2-m1-cD_1ue7-a2-m3-cD
80 1x3e-a1-m2-cB 119 101 0.3438 0.2773 0.3267 2.09e-06 1x3e-a1-m2-cA_1x3e-a1-m2-cB
81 1ue1-a1-m2-cB 119 107 0.3333 0.2689 0.2991 3.55e-06 1ue1-a1-m1-cB_1ue1-a1-m2-cB
82 1ue1-a1-m1-cB 119 107 0.3333 0.2689 0.2991 3.55e-06 1ue1-a1-m1-cB_1ue1-a1-m2-cB
83 7f5y-a1-m2-cB 120 86 0.2812 0.2250 0.3140 4.90e-06 7f5y-a1-m2-cA_7f5y-a1-m2-cB
84 1ue7-a1-m2-cA 106 78 0.2604 0.2358 0.3205 1.13e-05 1ue7-a1-m2-cB_1ue7-a1-m2-cA
85 1ue7-a1-m1-cA 106 78 0.2604 0.2358 0.3205 1.13e-05 1ue7-a1-m2-cB_1ue7-a1-m1-cA
86 3eiv-a2-m1-cB 111 80 0.2396 0.2072 0.2875 1.09e-04 3eiv-a2-m1-cA_3eiv-a2-m1-cB
87 3eiv-a3-m1-cD 100 70 0.2188 0.2100 0.3000 2.18e-04 3eiv-a3-m1-cD_3eiv-a3-m1-cC
88 3eiv-a1-m1-cD 100 70 0.2188 0.2100 0.3000 2.18e-04 3eiv-a1-m1-cA_3eiv-a1-m1-cD
89 3eiv-a2-m1-cA 98 73 0.2396 0.2347 0.3151 2.69e-04 3eiv-a2-m1-cA_3eiv-a2-m1-cB
90 3eiv-a1-m1-cA 98 73 0.2396 0.2347 0.3151 2.69e-04 3eiv-a1-m1-cA_3eiv-a1-m1-cD
91 3eiv-a3-m1-cC 111 83 0.2500 0.2162 0.2892 0.006 3eiv-a3-m1-cD_3eiv-a3-m1-cC
92 6moj-a1-m2-cA 223 50 0.1875 0.0807 0.3600 0.018 6moj-a1-m1-cA_6moj-a1-m2-cA
93 6moj-a1-m1-cA 223 50 0.1875 0.0807 0.3600 0.018 6moj-a1-m1-cA_6moj-a1-m2-cA
94 6moi-a1-m2-cA 222 50 0.1875 0.0811 0.3600 0.020 6moi-a1-m1-cA_6moi-a1-m2-cA
95 6moi-a1-m1-cA 222 50 0.1875 0.0811 0.3600 0.020 6moi-a1-m1-cA_6moi-a1-m2-cA
96 6cqk-a1-m1-cB 93 65 0.1771 0.1828 0.2615 0.15 6cqk-a1-m1-cD_6cqk-a1-m1-cB
97 6cqk-a1-m1-cD 87 32 0.1250 0.1379 0.3750 0.17 6cqk-a1-m1-cD_6cqk-a1-m1-cB
98 6cqo-a1-m1-cA 93 32 0.1250 0.1290 0.3750 0.24 6cqo-a1-m1-cG_6cqo-a1-m1-cA
99 6cqo-a1-m1-cG 87 32 0.1250 0.1379 0.3750 0.30 6cqo-a1-m1-cG_6cqo-a1-m1-cA
100 5aao-a5-m1-cH 154 58 0.2083 0.1299 0.3448 1.8 5aao-a5-m1-cH_5aao-a5-m1-cJ
101 5aao-a5-m1-cJ 157 58 0.2083 0.1274 0.3448 1.9 5aao-a5-m1-cH_5aao-a5-m1-cJ
102 3e17-a1-m1-cB 79 39 0.1250 0.1519 0.3077 3.9 3e17-a1-m1-cB_3e17-a1-m1-cA
103 3e17-a1-m1-cA 80 39 0.1250 0.1500 0.3077 4.0 3e17-a1-m1-cB_3e17-a1-m1-cA
104 5hhl-a1-m1-cA 292 26 0.1354 0.0445 0.5000 6.2 5hhl-a1-m1-cB_5hhl-a1-m1-cA
105 8a61-a1-m1-cD 560 66 0.2188 0.0375 0.3182 6.2 8a61-a1-m1-cP_8a61-a1-m1-cD
106 5hhl-a1-m1-cB 290 26 0.1354 0.0448 0.5000 6.4 5hhl-a1-m1-cB_5hhl-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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