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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
ATKLVIAIVQDKDANYLSDQFIDQNVRATKLSTTGGFLQSGNTTFIGIEEERVPEVLEII
KKASHTREEFTPSYPIKVQVGGATVLVLPVDQFERF

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3m05-a3-m1-cB 97 96 1.0000 0.9897 1.0000 1.28e-66 3m05-a3-m3-cC_3m05-a3-m1-cB
2 3m05-a1-m1-cB 97 96 1.0000 0.9897 1.0000 1.28e-66 3m05-a1-m1-cC_3m05-a1-m1-cB
3 3m05-a3-m3-cC 96 96 1.0000 1.0000 1.0000 1.47e-66 3m05-a3-m3-cC_3m05-a3-m1-cB
4 3m05-a1-m1-cC 96 96 1.0000 1.0000 1.0000 1.47e-66 3m05-a1-m1-cC_3m05-a1-m1-cB
5 4d3h-a1-m1-cB 104 95 0.5208 0.4808 0.5263 1.92e-33 4d3h-a1-m1-cC_4d3h-a1-m1-cB
6 4rww-a1-m1-cC 103 99 0.6042 0.5631 0.5859 2.07e-32 4rww-a1-m1-cC_4rww-a1-m1-cB
7 4d3h-a1-m1-cA 103 95 0.5208 0.4854 0.5263 5.73e-32 4d3h-a1-m1-cC_4d3h-a1-m1-cA
8 4rww-a1-m1-cB 106 102 0.6042 0.5472 0.5686 7.21e-32 4rww-a1-m1-cC_4rww-a1-m1-cB
9 4d3h-a1-m1-cC 101 95 0.5104 0.4851 0.5158 1.00e-29 4d3h-a1-m1-cC_4d3h-a1-m1-cA, 4d3h-a1-m1-cC_4d3h-a1-m1-cB
10 4rle-a1-m3-cA 116 111 0.5521 0.4569 0.4775 1.73e-29 4rle-a1-m2-cA_4rle-a1-m3-cA
11 4rle-a1-m2-cA 116 111 0.5521 0.4569 0.4775 1.73e-29 4rle-a1-m2-cA_4rle-a1-m3-cA
12 4wk1-a1-m3-cA 92 95 0.4792 0.5000 0.4842 2.22e-26 4wk1-a1-m2-cA_4wk1-a1-m3-cA
13 4wk1-a1-m2-cA 92 95 0.4792 0.5000 0.4842 2.22e-26 4wk1-a1-m2-cA_4wk1-a1-m3-cA
14 4rwx-a1-m1-cB 84 95 0.5000 0.5714 0.5053 4.89e-21 4rwx-a1-m1-cC_4rwx-a1-m1-cB
15 4rwx-a1-m1-cC 77 95 0.4375 0.5455 0.4421 2.74e-15 4rwx-a1-m1-cC_4rwx-a1-m1-cB
16 1v3r-a1-m1-cC 90 94 0.3021 0.3222 0.3085 1.14e-04 1v3r-a1-m1-cC_1v3r-a1-m1-cA
17 1v3r-a1-m1-cA 92 95 0.3021 0.3152 0.3053 0.008 1v3r-a1-m1-cC_1v3r-a1-m1-cA
18 1ufl-a2-m2-cC 99 105 0.3229 0.3131 0.2952 0.034 1ufl-a2-m2-cC_1ufl-a2-m1-cA
19 3q2w-a1-m2-cA 541 50 0.1667 0.0296 0.3200 0.39 3q2w-a1-m1-cA_3q2w-a1-m2-cA
20 3q2w-a1-m1-cA 541 50 0.1667 0.0296 0.3200 0.39 3q2w-a1-m1-cA_3q2w-a1-m2-cA
21 4v02-a1-m1-cC 122 63 0.1562 0.1230 0.2381 3.0 4v02-a1-m1-cD_4v02-a1-m1-cC
22 1ufl-a2-m1-cA 108 112 0.3021 0.2685 0.2589 3.3 1ufl-a2-m2-cC_1ufl-a2-m1-cA
23 3vz0-a2-m1-cD 445 56 0.1562 0.0337 0.2679 6.3 3vz0-a2-m1-cC_3vz0-a2-m1-cD
24 3vz0-a2-m1-cC 445 56 0.1562 0.0337 0.2679 6.3 3vz0-a2-m1-cC_3vz0-a2-m1-cD
25 6ixh-a1-m1-cE 135 24 0.1042 0.0741 0.4167 7.4 6ixh-a1-m1-cJ_6ixh-a1-m1-cE
26 3dak-a3-m1-cC 281 26 0.1042 0.0356 0.3846 8.1 3dak-a3-m1-cB_3dak-a3-m1-cC
27 6ixh-a1-m1-cJ 133 24 0.1042 0.0752 0.4167 8.5 6ixh-a1-m1-cJ_6ixh-a1-m1-cE

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Reference:
Jacob Schwartz et al.

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