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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=93)
AVTCGQVASSLAPCIPYARSAGGAVPPACCSGIKTLDGMARTTPDRQATCKCLKSASTSI
SGINYGLVASLPAKCGVNIPYKISPSTDCARVK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7ksc-a6-m1-cD 93 93 1.0000 1.0000 1.0000 8.43e-62 7ksc-a6-m1-cB_7ksc-a6-m1-cD
2 7ksc-a6-m1-cB 93 93 1.0000 1.0000 1.0000 8.43e-62 7ksc-a6-m1-cB_7ksc-a6-m1-cD
3 2alg-a6-m2-cB 92 92 0.6667 0.6739 0.6739 1.93e-39 2alg-a6-m1-cB_2alg-a6-m2-cB
4 2alg-a6-m1-cB 92 92 0.6667 0.6739 0.6739 1.93e-39 2alg-a6-m1-cB_2alg-a6-m2-cB
5 2alg-a5-m4-cA 92 92 0.6667 0.6739 0.6739 1.93e-39 2alg-a5-m1-cB_2alg-a5-m4-cA
6 2alg-a5-m1-cB 92 92 0.6667 0.6739 0.6739 1.93e-39 2alg-a5-m1-cB_2alg-a5-m4-cA
7 2alg-a4-m6-cA 92 92 0.6667 0.6739 0.6739 1.93e-39 2alg-a4-m1-cB_2alg-a4-m6-cA
8 2alg-a4-m1-cB 92 92 0.6667 0.6739 0.6739 1.93e-39 2alg-a4-m1-cB_2alg-a4-m6-cA
9 2alg-a3-m4-cA 92 92 0.6667 0.6739 0.6739 1.93e-39 2alg-a3-m2-cB_2alg-a3-m4-cA
10 2alg-a3-m2-cB 92 92 0.6667 0.6739 0.6739 1.93e-39 2alg-a3-m2-cB_2alg-a3-m4-cA
11 1uva-a1-m2-cA 91 92 0.5484 0.5604 0.5543 2.88e-29 1uva-a1-m1-cA_1uva-a1-m2-cA
12 1uva-a1-m1-cA 91 92 0.5484 0.5604 0.5543 2.88e-29 1uva-a1-m1-cA_1uva-a1-m2-cA
13 7ksb-a3-m1-cB 92 92 0.4516 0.4565 0.4565 1.07e-21 7ksb-a3-m1-cA_7ksb-a3-m1-cB
14 7ksb-a3-m1-cA 92 92 0.4516 0.4565 0.4565 1.07e-21 7ksb-a3-m1-cA_7ksb-a3-m1-cB
15 6iwo-a1-m2-cA 92 92 0.4194 0.4239 0.4239 1.76e-20 6iwo-a1-m1-cB_6iwo-a1-m2-cA
16 6iwm-a1-m1-cA 92 92 0.4194 0.4239 0.4239 1.76e-20 6iwm-a1-m2-cB_6iwm-a1-m1-cA
17 6iwo-a1-m1-cB 90 91 0.4086 0.4222 0.4176 5.73e-20 6iwo-a1-m1-cB_6iwo-a1-m2-cA
18 6iwm-a1-m2-cB 90 91 0.4086 0.4222 0.4176 5.73e-20 6iwm-a1-m2-cB_6iwm-a1-m1-cA
19 6ptv-a1-m1-cB 376 72 0.2473 0.0612 0.3194 0.33 6ptv-a1-m1-cB_6ptv-a1-m1-cA
20 6ptv-a1-m1-cA 379 72 0.2473 0.0607 0.3194 0.33 6ptv-a1-m1-cB_6ptv-a1-m1-cA
21 4nre-a2-m6-cA 675 51 0.1828 0.0252 0.3333 1.7 4nre-a2-m2-cA_4nre-a2-m6-cA, 4nre-a2-m5-cA_4nre-a2-m6-cA
22 4nre-a2-m5-cA 675 51 0.1828 0.0252 0.3333 1.7 4nre-a2-m5-cA_4nre-a2-m6-cA
23 4nre-a2-m2-cA 675 51 0.1828 0.0252 0.3333 1.7 4nre-a2-m2-cA_4nre-a2-m6-cA
24 7laf-a1-m1-cB 655 51 0.1828 0.0260 0.3333 2.0 7laf-a1-m1-cB_7laf-a1-m1-cA
25 7laf-a1-m1-cA 663 51 0.1828 0.0256 0.3333 2.0 7laf-a1-m1-cB_7laf-a1-m1-cA
26 2pby-a1-m1-cD 286 19 0.0753 0.0245 0.3684 6.6 2pby-a1-m1-cD_2pby-a1-m1-cA, 2pby-a1-m1-cD_2pby-a1-m1-cC
27 2pby-a1-m1-cA 291 19 0.0753 0.0241 0.3684 6.7 2pby-a1-m1-cD_2pby-a1-m1-cA
28 2pby-a1-m1-cC 288 19 0.0753 0.0243 0.3684 7.3 2pby-a1-m1-cD_2pby-a1-m1-cC
29 6to4-a1-m1-cA 291 31 0.1505 0.0481 0.4516 8.1 6to4-a1-m1-cD_6to4-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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