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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=70)
DAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEE
IKHLKLGLEQ

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3vp9-a1-m2-cA 70 70 1.0000 1.0000 1.0000 2.99e-46 3vp9-a1-m1-cA_3vp9-a1-m2-cA, 3vp9-a1-m2-cA_3vp9-a1-m2-cB
2 3vp9-a1-m1-cA 70 70 1.0000 1.0000 1.0000 2.99e-46 3vp9-a1-m1-cA_3vp9-a1-m2-cA
3 3vp9-a1-m2-cB 77 70 1.0000 0.9091 1.0000 3.85e-46 3vp9-a1-m2-cA_3vp9-a1-m2-cB
4 3vp8-a1-m1-cB 80 65 0.9143 0.8000 0.9846 1.25e-41 3vp8-a1-m1-cD_3vp8-a1-m1-cB
5 3vp8-a1-m1-cC 77 64 0.9000 0.8182 0.9844 6.43e-41 3vp8-a1-m1-cC_3vp8-a1-m1-cD
6 3vp8-a1-m1-cD 78 63 0.8857 0.7949 0.9841 2.64e-40 3vp8-a1-m1-cA_3vp8-a1-m1-cD, 3vp8-a1-m1-cC_3vp8-a1-m1-cD, 3vp8-a1-m1-cD_3vp8-a1-m1-cB
7 3vp8-a1-m1-cA 75 62 0.8714 0.8133 0.9839 4.91e-39 3vp8-a1-m1-cA_3vp8-a1-m1-cD
8 6nmx-a2-m1-cD 348 21 0.1429 0.0287 0.4762 7.5 6nmx-a2-m1-cD_6nmx-a2-m1-cB
9 6nmx-a2-m1-cB 349 21 0.1429 0.0287 0.4762 7.5 6nmx-a2-m1-cD_6nmx-a2-m1-cB
10 2aeu-a1-m2-cA 366 55 0.2143 0.0410 0.2727 8.2 2aeu-a1-m1-cA_2aeu-a1-m2-cA
11 2aeu-a1-m1-cA 366 55 0.2143 0.0410 0.2727 8.2 2aeu-a1-m1-cA_2aeu-a1-m2-cA
12 5ffp-a1-m1-cB 150 22 0.1571 0.0733 0.5000 8.7 5ffp-a1-m1-cA_5ffp-a1-m1-cB
13 5ffp-a1-m1-cA 150 22 0.1571 0.0733 0.5000 8.7 5ffp-a1-m1-cA_5ffp-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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