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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=65)
DALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQKAVIFRTKLGKEICADPKEKWVQNY
MKHLG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2ra4-a4-m4-cB 65 65 1.0000 1.0000 1.0000 1.32e-44 2ra4-a4-m2-cB_2ra4-a4-m4-cB
2 2ra4-a4-m2-cB 65 65 1.0000 1.0000 1.0000 1.32e-44 2ra4-a4-m2-cB_2ra4-a4-m4-cB
3 2ra4-a2-m4-cB 65 65 1.0000 1.0000 1.0000 1.32e-44 2ra4-a2-m4-cA_2ra4-a2-m4-cB
4 2ra4-a2-m4-cA 65 65 1.0000 1.0000 1.0000 1.32e-44 2ra4-a2-m4-cA_2ra4-a2-m4-cB
5 7s5a-a1-m1-cA 73 66 0.5692 0.5068 0.5606 2.61e-24 7s5a-a1-m1-cA_7s5a-a1-m1-cB
6 7s5a-a1-m1-cB 76 66 0.5692 0.4868 0.5606 2.86e-24 7s5a-a1-m1-cA_7s5a-a1-m1-cB
7 1esr-a1-m2-cA 75 66 0.5692 0.4933 0.5606 2.91e-24 1esr-a1-m1-cA_1esr-a1-m2-cA
8 1esr-a1-m1-cA 75 66 0.5692 0.4933 0.5606 2.91e-24 1esr-a1-m1-cA_1esr-a1-m2-cA
9 1ncv-a1-m1-cB 76 65 0.6154 0.5263 0.6154 6.81e-24 1ncv-a1-m1-cA_1ncv-a1-m1-cB
10 1ncv-a1-m1-cA 76 65 0.6154 0.5263 0.6154 6.81e-24 1ncv-a1-m1-cA_1ncv-a1-m1-cB
11 2q8r-a2-m1-cG 63 59 0.4000 0.4127 0.4407 2.25e-16 2q8r-a2-m1-cF_2q8r-a2-m1-cG
12 2q8r-a2-m1-cF 63 59 0.4000 0.4127 0.4407 2.25e-16 2q8r-a2-m1-cF_2q8r-a2-m1-cG
13 5yam-a1-m1-cB 69 56 0.3385 0.3188 0.3929 7.57e-13 5yam-a1-m1-cA_5yam-a1-m1-cB
14 5yam-a1-m1-cA 69 56 0.3385 0.3188 0.3929 7.57e-13 5yam-a1-m1-cA_5yam-a1-m1-cB
15 4mhe-a2-m1-cB 69 56 0.3692 0.3478 0.4286 1.10e-12 4mhe-a2-m1-cC_4mhe-a2-m1-cB
16 4mhe-a2-m1-cC 61 56 0.3692 0.3934 0.4286 1.30e-12 4mhe-a2-m1-cC_4mhe-a2-m1-cB
17 2vxw-a1-m1-cD 62 58 0.3077 0.3226 0.3448 4.12e-12 2vxw-a1-m1-cD_2vxw-a1-m1-cA, 2vxw-a1-m1-cD_2vxw-a1-m1-cB
18 2vxw-a1-m1-cB 69 58 0.3077 0.2899 0.3448 4.81e-12 2vxw-a1-m1-cD_2vxw-a1-m1-cB
19 2vxw-a1-m1-cA 69 58 0.3077 0.2899 0.3448 4.81e-12 2vxw-a1-m1-cD_2vxw-a1-m1-cA
20 6aez-a1-m3-cA 64 59 0.2923 0.2969 0.3220 1.38e-11 6aez-a1-m2-cA_6aez-a1-m3-cA
21 6aez-a1-m2-cA 64 59 0.2923 0.2969 0.3220 1.38e-11 6aez-a1-m2-cA_6aez-a1-m3-cA
22 2l9h-a1-m1-cC 67 58 0.2923 0.2836 0.3276 1.46e-11 2l9h-a1-m1-cA_2l9h-a1-m1-cC
23 2l9h-a1-m1-cA 67 58 0.2923 0.2836 0.3276 1.46e-11 2l9h-a1-m1-cA_2l9h-a1-m1-cC
24 1hrj-a1-m1-cB 68 58 0.2923 0.2794 0.3276 1.50e-11 1hrj-a1-m1-cA_1hrj-a1-m1-cB
25 1hrj-a1-m1-cA 68 58 0.2923 0.2794 0.3276 1.50e-11 1hrj-a1-m1-cA_1hrj-a1-m1-cB
26 5l2u-a2-m2-cH 64 58 0.2923 0.2969 0.3276 1.59e-11 5l2u-a2-m2-cG_5l2u-a2-m2-cH
27 5l2u-a2-m2-cG 64 58 0.2923 0.2969 0.3276 1.59e-11 5l2u-a2-m2-cG_5l2u-a2-m2-cH, 5l2u-a2-m2-cG_5l2u-a2-m2-cI
28 5l2u-a2-m2-cI 65 58 0.2923 0.2923 0.3276 1.68e-11 5l2u-a2-m2-cG_5l2u-a2-m2-cI
29 5dnf-a1-m1-cG 65 58 0.2923 0.2923 0.3276 1.68e-11 5dnf-a1-m1-cE_5dnf-a1-m1-cG
30 5dnf-a1-m1-cE 65 58 0.2923 0.2923 0.3276 1.68e-11 5dnf-a1-m1-cE_5dnf-a1-m1-cG
31 5dnf-a1-m1-cD 65 58 0.2923 0.2923 0.3276 1.68e-11 5dnf-a1-m1-cA_5dnf-a1-m1-cD
32 5dnf-a1-m1-cA 65 58 0.2923 0.2923 0.3276 1.68e-11 5dnf-a1-m1-cA_5dnf-a1-m1-cD
33 1nr4-a5-m4-cG 66 61 0.3538 0.3485 0.3770 1.08e-10 1nr4-a5-m4-cG_1nr4-a5-m3-cE
34 1nr4-a5-m1-cA 67 61 0.3538 0.3433 0.3770 1.08e-10 1nr4-a5-m1-cA_1nr4-a5-m3-cE
35 1nr4-a5-m3-cE 69 61 0.3538 0.3333 0.3770 1.11e-10 1nr4-a5-m1-cA_1nr4-a5-m3-cE, 1nr4-a5-m3-cF_1nr4-a5-m3-cE, 1nr4-a5-m4-cG_1nr4-a5-m3-cE
36 4oij-a1-m1-cB 71 63 0.4000 0.3662 0.4127 5.26e-10 4oij-a1-m1-cA_4oij-a1-m1-cB
37 4oij-a1-m1-cA 71 63 0.4000 0.3662 0.4127 5.26e-10 4oij-a1-m1-cA_4oij-a1-m1-cB
38 1nr4-a5-m3-cF 66 60 0.3385 0.3333 0.3667 1.17e-09 1nr4-a5-m3-cF_1nr4-a5-m3-cE
39 6log-a1-m2-cA 63 58 0.2769 0.2857 0.3103 1.55e-09 6log-a1-m1-cA_6log-a1-m2-cA
40 6log-a1-m1-cA 63 58 0.2769 0.2857 0.3103 1.55e-09 6log-a1-m1-cA_6log-a1-m2-cA
41 5ltl-a1-m1-cA 67 60 0.3385 0.3284 0.3667 3.82e-09 5ltl-a1-m1-cA_5ltl-a1-m1-cB
42 5ltl-a1-m1-cB 68 60 0.3385 0.3235 0.3667 3.91e-09 5ltl-a1-m1-cA_5ltl-a1-m1-cB
43 2fj2-a2-m1-cD 67 59 0.3077 0.2985 0.3390 8.77e-09 2fj2-a2-m1-cD_2fj2-a2-m1-cC
44 2fj2-a2-m1-cC 68 59 0.3077 0.2941 0.3390 8.87e-09 2fj2-a2-m1-cD_2fj2-a2-m1-cC
45 5eki-a7-m1-cA 72 61 0.3692 0.3333 0.3934 2.45e-08 5eki-a7-m1-cF_5eki-a7-m1-cA
46 2jp1-a1-m1-cB 60 52 0.2923 0.3167 0.3654 2.61e-08 2jp1-a1-m1-cA_2jp1-a1-m1-cB
47 2jp1-a1-m1-cA 60 52 0.2923 0.3167 0.3654 2.61e-08 2jp1-a1-m1-cA_2jp1-a1-m1-cB
48 5eki-a7-m1-cF 70 61 0.3692 0.3429 0.3934 2.65e-08 5eki-a7-m1-cF_5eki-a7-m1-cA
49 1f2l-a1-m1-cD 70 50 0.2923 0.2714 0.3800 8.88e-08 1f2l-a1-m1-cA_1f2l-a1-m1-cD, 1f2l-a1-m1-cC_1f2l-a1-m1-cD
50 1f2l-a1-m1-cC 64 50 0.2923 0.2969 0.3800 9.17e-08 1f2l-a1-m1-cC_1f2l-a1-m1-cD
51 1f2l-a1-m1-cA 64 50 0.2923 0.2969 0.3800 9.17e-08 1f2l-a1-m1-cA_1f2l-a1-m1-cD
52 2n54-a1-m1-cB 66 55 0.2615 0.2576 0.3091 4.27e-07 2n54-a1-m1-cA_2n54-a1-m1-cB
53 2n54-a1-m1-cA 66 55 0.2615 0.2576 0.3091 4.27e-07 2n54-a1-m1-cA_2n54-a1-m1-cB
54 2hci-a1-m1-cB 65 58 0.2308 0.2308 0.2586 0.002 2hci-a1-m1-cB_2hci-a1-m1-cA
55 2hci-a1-m1-cA 68 58 0.2308 0.2206 0.2586 0.002 2hci-a1-m1-cB_2hci-a1-m1-cA
56 1qe6-a3-m2-cA 68 30 0.1846 0.1765 0.4000 0.003 1qe6-a3-m2-cA_1qe6-a3-m2-cB
57 1qe6-a3-m1-cD 72 30 0.1846 0.1667 0.4000 0.003 1qe6-a3-m2-cB_1qe6-a3-m1-cD
58 1qe6-a3-m2-cB 71 30 0.1846 0.1690 0.4000 0.003 1qe6-a3-m2-cA_1qe6-a3-m2-cB, 1qe6-a3-m2-cB_1qe6-a3-m1-cD
59 3hp3-a3-m1-cD 64 36 0.1692 0.1719 0.3056 0.009 3hp3-a3-m1-cD_3hp3-a3-m1-cF
60 3hp3-a3-m1-cF 65 36 0.1692 0.1692 0.3056 0.010 3hp3-a3-m1-cD_3hp3-a3-m1-cF
61 4uai-a1-m1-cB 67 36 0.1692 0.1642 0.3056 0.012 4uai-a1-m1-cB_4uai-a1-m1-cA
62 4uai-a1-m1-cA 68 36 0.1692 0.1618 0.3056 0.013 4uai-a1-m1-cB_4uai-a1-m1-cA
63 3n52-a3-m1-cD 70 50 0.2000 0.1857 0.2600 0.30 3n52-a3-m1-cC_3n52-a3-m1-cD, 3n52-a3-m1-cD_3n52-a3-m1-cB
64 1mi2-a1-m1-cB 73 50 0.2000 0.1781 0.2600 0.31 1mi2-a1-m1-cA_1mi2-a1-m1-cB
65 1mi2-a1-m1-cA 73 50 0.2000 0.1781 0.2600 0.31 1mi2-a1-m1-cA_1mi2-a1-m1-cB
66 3n52-a3-m1-cB 71 50 0.2000 0.1831 0.2600 0.34 3n52-a3-m1-cD_3n52-a3-m1-cB
67 3n52-a3-m1-cC 67 50 0.2000 0.1940 0.2600 0.36 3n52-a3-m1-cC_3n52-a3-m1-cD
68 5dwa-a1-m1-cB 278 42 0.1692 0.0396 0.2619 1.4 5dwa-a1-m1-cA_5dwa-a1-m1-cB
69 5dwa-a1-m1-cA 278 42 0.1692 0.0396 0.2619 1.4 5dwa-a1-m1-cA_5dwa-a1-m1-cB
70 2mgs-a1-m1-cB 71 33 0.1538 0.1408 0.3030 2.2 2mgs-a1-m1-cA_2mgs-a1-m1-cB
71 2mgs-a1-m1-cA 71 33 0.1538 0.1408 0.3030 2.2 2mgs-a1-m1-cA_2mgs-a1-m1-cB
72 1mjt-a1-m1-cA 346 49 0.2769 0.0520 0.3673 3.3 1mjt-a1-m1-cA_1mjt-a1-m1-cB
73 1mjt-a1-m1-cB 347 49 0.2769 0.0519 0.3673 3.3 1mjt-a1-m1-cA_1mjt-a1-m1-cB
74 5w63-a2-m2-cA 174 43 0.1846 0.0690 0.2791 4.3 5w63-a2-m1-cA_5w63-a2-m2-cA
75 5w63-a2-m1-cA 174 43 0.1846 0.0690 0.2791 4.3 5w63-a2-m1-cA_5w63-a2-m2-cA
76 3hoa-a1-m1-cB 509 60 0.2615 0.0334 0.2833 6.4 3hoa-a1-m1-cA_3hoa-a1-m1-cB
77 3hoa-a1-m1-cA 509 60 0.2615 0.0334 0.2833 6.4 3hoa-a1-m1-cA_3hoa-a1-m1-cB
78 1qqg-a1-m1-cB 210 53 0.2154 0.0667 0.2642 8.6 1qqg-a1-m1-cA_1qqg-a1-m1-cB
79 1qqg-a1-m1-cA 207 53 0.2154 0.0676 0.2642 8.7 1qqg-a1-m1-cA_1qqg-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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