Home Research COVID-19 Services Publications People Teaching Job Opening News Forum
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=90)
DDETLRLQFGHLIRILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFGLKDRLIRAGLVKE
ETLSYRVKTLKLTEKGRRLAECLEKCRDVL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2pg4-a4-m4-cA 90 90 1.0000 1.0000 1.0000 1.44e-59 2pg4-a4-m4-cA_2pg4-a4-m4-cB
2 2pg4-a3-m3-cA 90 90 1.0000 1.0000 1.0000 1.44e-59 2pg4-a3-m1-cA_2pg4-a3-m3-cA
3 2pg4-a3-m1-cA 90 90 1.0000 1.0000 1.0000 1.44e-59 2pg4-a3-m1-cA_2pg4-a3-m3-cA
4 2pg4-a4-m4-cB 90 89 0.9889 0.9889 1.0000 1.76e-58 2pg4-a4-m1-cB_2pg4-a4-m4-cB, 2pg4-a4-m4-cA_2pg4-a4-m4-cB
5 2pg4-a4-m1-cB 90 89 0.9889 0.9889 1.0000 1.76e-58 2pg4-a4-m1-cB_2pg4-a4-m4-cB
6 3fm5-a3-m1-cC 134 45 0.2222 0.1493 0.4444 0.21 3fm5-a3-m1-cC_3fm5-a3-m1-cB, 3fm5-a3-m1-cC_3fm5-a3-m1-cD
7 3fm5-a3-m1-cB 137 45 0.2000 0.1314 0.4000 0.73 3fm5-a3-m1-cC_3fm5-a3-m1-cB, 3fm5-a3-m1-cD_3fm5-a3-m1-cB
8 4aik-a1-m1-cA 139 69 0.2111 0.1367 0.2754 1.3 4aik-a1-m1-cA_4aik-a1-m1-cB
9 4aik-a1-m1-cB 142 69 0.2111 0.1338 0.2754 1.3 4aik-a1-m1-cA_4aik-a1-m1-cB
10 1tbx-a2-m2-cA 93 52 0.2333 0.2258 0.4038 1.6 1tbx-a2-m2-cB_1tbx-a2-m2-cA
11 1tbx-a2-m1-cA 93 52 0.2333 0.2258 0.4038 1.6 1tbx-a2-m2-cB_1tbx-a2-m1-cA
12 1tbx-a2-m2-cB 89 52 0.2333 0.2360 0.4038 1.9 1tbx-a2-m2-cB_1tbx-a2-m1-cA, 1tbx-a2-m2-cB_1tbx-a2-m2-cA
13 1rq0-a1-m1-cC 314 59 0.2222 0.0637 0.3390 2.2 1rq0-a1-m1-cC_1rq0-a1-m1-cA
14 1rq0-a1-m1-cA 319 59 0.2222 0.0627 0.3390 2.3 1rq0-a1-m1-cC_1rq0-a1-m1-cA
15 3mkv-a1-m1-cH 412 47 0.2000 0.0437 0.3830 2.8 3mkv-a1-m1-cC_3mkv-a1-m1-cH, 3mkv-a1-m1-cE_3mkv-a1-m1-cH, 3mkv-a1-m1-cF_3mkv-a1-m1-cH
16 3mkv-a1-m1-cF 412 47 0.2000 0.0437 0.3830 2.8 3mkv-a1-m1-cF_3mkv-a1-m1-cH
17 3mkv-a1-m1-cE 412 47 0.2000 0.0437 0.3830 2.8 3mkv-a1-m1-cE_3mkv-a1-m1-cH
18 3mkv-a1-m1-cC 412 47 0.2000 0.0437 0.3830 2.8 3mkv-a1-m1-cC_3mkv-a1-m1-cH
19 1x0p-a1-m1-cH 138 32 0.1222 0.0797 0.3438 3.8 1x0p-a1-m1-cH_1x0p-a1-m1-cC, 1x0p-a1-m1-cH_1x0p-a1-m1-cG
20 1x0p-a1-m1-cG 139 32 0.1222 0.0791 0.3438 3.9 1x0p-a1-m1-cH_1x0p-a1-m1-cG
21 1x0p-a1-m1-cC 139 32 0.1222 0.0791 0.3438 3.9 1x0p-a1-m1-cH_1x0p-a1-m1-cC
22 1wkl-a2-m6-cB 137 45 0.1889 0.1241 0.3778 4.2 1wkl-a2-m2-cB_1wkl-a2-m6-cB, 1wkl-a2-m3-cB_1wkl-a2-m6-cB
23 1wkl-a2-m3-cB 137 45 0.1889 0.1241 0.3778 4.2 1wkl-a2-m3-cB_1wkl-a2-m6-cB
24 1wkl-a2-m2-cB 137 45 0.1889 0.1241 0.3778 4.2 1wkl-a2-m2-cB_1wkl-a2-m6-cB
25 1wkj-a1-m3-cB 137 45 0.1889 0.1241 0.3778 4.2 1wkj-a1-m2-cB_1wkj-a1-m3-cB, 1wkj-a1-m3-cA_1wkj-a1-m3-cB
26 1wkj-a1-m3-cA 137 45 0.1889 0.1241 0.3778 4.2 1wkj-a1-m3-cA_1wkj-a1-m3-cB
27 1wkj-a1-m2-cB 137 45 0.1889 0.1241 0.3778 4.2 1wkj-a1-m2-cB_1wkj-a1-m3-cB
28 6pcp-a2-m1-cC 140 54 0.2000 0.1286 0.3333 4.4 6pcp-a2-m1-cB_6pcp-a2-m1-cC
29 3qpt-a1-m2-cA 130 73 0.2333 0.1615 0.2877 5.7 3qpt-a1-m1-cA_3qpt-a1-m2-cA
30 3qpt-a1-m1-cA 130 73 0.2333 0.1615 0.2877 5.7 3qpt-a1-m1-cA_3qpt-a1-m2-cA
31 2r6f-a1-m1-cA 884 26 0.1222 0.0124 0.4231 6.4 2r6f-a1-m1-cB_2r6f-a1-m1-cA
32 2r6f-a1-m1-cB 864 26 0.1222 0.0127 0.4231 6.5 2r6f-a1-m1-cB_2r6f-a1-m1-cA
33 3l7o-a1-m1-cA 221 13 0.1111 0.0452 0.7692 7.1 3l7o-a1-m1-cA_3l7o-a1-m1-cB
34 3l7o-a1-m1-cB 224 13 0.1111 0.0446 0.7692 7.2 3l7o-a1-m1-cA_3l7o-a1-m1-cB
35 3k2q-a2-m1-cC 392 55 0.1667 0.0383 0.2727 7.2 3k2q-a2-m1-cB_3k2q-a2-m1-cC
36 3k2q-a2-m1-cB 392 55 0.1667 0.0383 0.2727 7.2 3k2q-a2-m1-cB_3k2q-a2-m1-cC
37 2qvo-a2-m2-cA 87 25 0.0889 0.0920 0.3200 7.8 2qvo-a2-m1-cA_2qvo-a2-m2-cA
38 2qvo-a2-m1-cA 87 25 0.0889 0.0920 0.3200 7.8 2qvo-a2-m1-cA_2qvo-a2-m2-cA
39 7jz6-a1-m1-cD 662 28 0.1222 0.0166 0.3929 8.1 7jz6-a1-m1-cB_7jz6-a1-m1-cD, 7jz6-a1-m1-cC_7jz6-a1-m1-cD
40 7jz6-a1-m1-cC 662 28 0.1222 0.0166 0.3929 8.1 7jz6-a1-m1-cC_7jz6-a1-m1-cD
41 7jz6-a1-m1-cB 662 28 0.1222 0.0166 0.3929 8.1 7jz6-a1-m1-cB_7jz6-a1-m1-cD

[Back]
Reference:
Jacob Schwartz et al.

petefredumich.edu | 1150 W. Medical Center Dr., Ann Arbor, MI 48109-0600