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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=71)
DDSAAEWNVSRTPDGDYRLAITCPNKEWLLQSIEGMIKEAAAEVLRNPNQENLRRHANKL
LSLKKRAYELP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2rp4-a1-m1-cD 71 71 1.0000 1.0000 1.0000 2.82e-48 2rp4-a1-m1-cA_2rp4-a1-m1-cD, 2rp4-a1-m1-cC_2rp4-a1-m1-cD
2 2rp4-a1-m1-cC 71 71 1.0000 1.0000 1.0000 2.82e-48 2rp4-a1-m1-cC_2rp4-a1-m1-cD
3 2rp4-a1-m1-cA 71 71 1.0000 1.0000 1.0000 2.82e-48 2rp4-a1-m1-cA_2rp4-a1-m1-cD
4 1gxr-a1-m1-cB 324 42 0.2254 0.0494 0.3810 0.036 1gxr-a1-m1-cB_1gxr-a1-m1-cA
5 6g56-a1-m1-cA 381 23 0.1268 0.0236 0.3913 1.4 6g56-a1-m1-cA_6g56-a1-m1-cB
6 6g56-a1-m1-cB 382 23 0.1268 0.0236 0.3913 1.4 6g56-a1-m1-cA_6g56-a1-m1-cB
7 6f91-a4-m1-cG 742 47 0.2113 0.0202 0.3191 2.0 6f91-a4-m1-cF_6f91-a4-m1-cG
8 6f91-a4-m1-cF 736 48 0.2113 0.0204 0.3125 2.8 6f91-a4-m1-cF_6f91-a4-m1-cG
9 2wyu-a1-m1-cA 256 46 0.2394 0.0664 0.3696 3.4 2wyu-a1-m1-cB_2wyu-a1-m1-cA, 2wyu-a1-m1-cD_2wyu-a1-m1-cA
10 2wyu-a1-m1-cB 250 46 0.2394 0.0680 0.3696 3.5 2wyu-a1-m1-cB_2wyu-a1-m1-cA
11 2wyu-a1-m1-cD 245 46 0.2394 0.0694 0.3696 3.5 2wyu-a1-m1-cD_2wyu-a1-m1-cA
12 2pff-a1-m2-cH 2006 23 0.1831 0.0065 0.5652 4.0 2pff-a1-m2-cE_2pff-a1-m2-cH
13 2pff-a1-m2-cE 2006 23 0.1831 0.0065 0.5652 4.0 2pff-a1-m2-cE_2pff-a1-m2-cH
14 2c1s-a1-m2-cB 123 28 0.1408 0.0813 0.3571 6.3 2c1s-a1-m1-cA_2c1s-a1-m2-cB, 2c1s-a1-m1-cB_2c1s-a1-m2-cB, 2c1s-a1-m2-cA_2c1s-a1-m2-cB
15 2c1s-a1-m2-cA 123 28 0.1408 0.0813 0.3571 6.3 2c1s-a1-m2-cA_2c1s-a1-m2-cB
16 2c1s-a1-m1-cB 123 28 0.1408 0.0813 0.3571 6.3 2c1s-a1-m1-cB_2c1s-a1-m2-cB
17 2c1s-a1-m1-cA 123 28 0.1408 0.0813 0.3571 6.3 2c1s-a1-m1-cA_2c1s-a1-m2-cB
18 2p1o-a2-m2-cB 571 50 0.2254 0.0280 0.3200 7.7 2p1o-a2-m1-cB_2p1o-a2-m2-cB
19 2p1o-a2-m1-cB 571 50 0.2254 0.0280 0.3200 7.7 2p1o-a2-m1-cB_2p1o-a2-m2-cB
20 2mme-a1-m1-cc 83 54 0.1972 0.1687 0.2593 9.1 2mme-a1-m1-cR_2mme-a1-m1-cc, 2mme-a1-m1-cW_2mme-a1-m1-cc, 2mme-a1-m1-cX_2mme-a1-m1-cc
21 2mme-a1-m1-cX 83 54 0.1972 0.1687 0.2593 9.1 2mme-a1-m1-cX_2mme-a1-m1-cc
22 2mme-a1-m1-cW 83 54 0.1972 0.1687 0.2593 9.1 2mme-a1-m1-cW_2mme-a1-m1-cc
23 2mme-a1-m1-cR 83 54 0.1972 0.1687 0.2593 9.1 2mme-a1-m1-cR_2mme-a1-m1-cc
24 1ulu-a1-m1-cA 240 36 0.2113 0.0625 0.4167 9.7 1ulu-a1-m1-cC_1ulu-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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