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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=88)
DEQNSAKAVVLLKAANERRLQILCLHNQELSVGELCAKLQLSQSALSQHLAWLRRDGLVT
TRKEAQTVYYTLKSEEVKAIKLLHSLYC

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3jth-a1-m1-cA 92 88 1.0000 0.9565 1.0000 5.75e-59 3jth-a1-m1-cB_3jth-a1-m1-cA
2 3jth-a1-m1-cB 88 88 1.0000 1.0000 1.0000 7.22e-59 3jth-a1-m1-cB_3jth-a1-m1-cA
3 4ooi-a1-m1-cB 96 90 0.8295 0.7604 0.8111 4.80e-42 4ooi-a1-m1-cA_4ooi-a1-m1-cB
4 4ooi-a1-m1-cA 95 90 0.8295 0.7684 0.8111 5.03e-42 4ooi-a1-m1-cA_4ooi-a1-m1-cB
5 4omz-a2-m1-cC 100 73 0.4318 0.3800 0.5205 1.75e-16 4omz-a2-m1-cD_4omz-a2-m1-cC
6 4omz-a2-m1-cD 98 73 0.4318 0.3878 0.5205 2.12e-16 4omz-a2-m1-cD_4omz-a2-m1-cC
7 3cuo-a2-m1-cD 94 77 0.3864 0.3617 0.4416 7.73e-13 3cuo-a2-m1-cD_3cuo-a2-m1-cC
8 6o8l-a1-m2-cA 92 79 0.4091 0.3913 0.4557 8.49e-13 6o8l-a1-m1-cA_6o8l-a1-m2-cA
9 6o8l-a1-m1-cA 92 79 0.4091 0.3913 0.4557 8.49e-13 6o8l-a1-m1-cA_6o8l-a1-m2-cA
10 3cuo-a2-m1-cC 95 77 0.3864 0.3579 0.4416 8.82e-13 3cuo-a2-m1-cD_3cuo-a2-m1-cC
11 3pqk-a3-m1-cE 100 69 0.3182 0.2800 0.4058 8.52e-10 3pqk-a3-m1-cF_3pqk-a3-m1-cE
12 3pqk-a3-m1-cF 99 69 0.3182 0.2828 0.4058 8.61e-10 3pqk-a3-m1-cF_3pqk-a3-m1-cE
13 7p6f-a3-m3-cDDD 97 76 0.3295 0.2990 0.3816 1.63e-09 7p6f-a3-m1-cDDD_7p6f-a3-m3-cDDD
14 7p6f-a3-m1-cDDD 97 76 0.3295 0.2990 0.3816 1.63e-09 7p6f-a3-m1-cDDD_7p6f-a3-m3-cDDD
15 3f6v-a1-m2-cA 96 74 0.2955 0.2708 0.3514 5.71e-07 3f6v-a1-m1-cA_3f6v-a1-m2-cA
16 3f6v-a1-m1-cA 96 74 0.2955 0.2708 0.3514 5.71e-07 3f6v-a1-m1-cA_3f6v-a1-m2-cA
17 6jmi-a1-m1-cA 100 65 0.2614 0.2300 0.3538 1.00e-05 6jmi-a1-m1-cD_6jmi-a1-m1-cA
18 2lkp-a1-m1-cB 119 79 0.3182 0.2353 0.3544 2.02e-05 2lkp-a1-m1-cA_2lkp-a1-m1-cB
19 2lkp-a1-m1-cA 119 79 0.3182 0.2353 0.3544 2.02e-05 2lkp-a1-m1-cA_2lkp-a1-m1-cB
20 1r23-a1-m1-cB 97 52 0.2386 0.2165 0.4038 2.31e-05 1r23-a1-m1-cB_1r23-a1-m1-cA
21 1r23-a1-m1-cA 104 52 0.2386 0.2019 0.4038 2.90e-05 1r23-a1-m1-cB_1r23-a1-m1-cA
22 3gw2-a1-m2-cA 92 63 0.2727 0.2609 0.3810 4.63e-04 3gw2-a1-m1-cA_3gw2-a1-m2-cA
23 3gw2-a1-m1-cA 92 63 0.2727 0.2609 0.3810 4.63e-04 3gw2-a1-m1-cA_3gw2-a1-m2-cA
24 2kjb-a1-m1-cB 95 49 0.2045 0.1895 0.3673 0.002 2kjb-a1-m1-cA_2kjb-a1-m1-cB
25 2kjb-a1-m1-cA 95 49 0.2045 0.1895 0.3673 0.002 2kjb-a1-m1-cA_2kjb-a1-m1-cB
26 1r1v-a3-m2-cA 95 49 0.2045 0.1895 0.3673 0.002 1r1v-a3-m2-cA_1r1v-a3-m2-cB
27 1r1v-a3-m2-cB 96 49 0.2045 0.1875 0.3673 0.003 1r1v-a3-m2-cA_1r1v-a3-m2-cB
28 6cdb-a3-m4-cB 95 49 0.2045 0.1895 0.3673 0.003 6cdb-a3-m2-cB_6cdb-a3-m4-cB, 6cdb-a3-m4-cB_6cdb-a3-m3-cA
29 6cdb-a3-m2-cB 95 49 0.2045 0.1895 0.3673 0.003 6cdb-a3-m2-cB_6cdb-a3-m4-cB
30 6cdb-a3-m3-cA 97 49 0.2045 0.1856 0.3673 0.004 6cdb-a3-m4-cB_6cdb-a3-m3-cA
31 2jsc-a1-m1-cA 96 40 0.2045 0.1875 0.4500 0.006 2jsc-a1-m1-cA_2jsc-a1-m1-cB
32 2jsc-a1-m1-cB 97 40 0.2045 0.1856 0.4500 0.006 2jsc-a1-m1-cA_2jsc-a1-m1-cB
33 7txn-a1-m1-cB 105 83 0.2727 0.2286 0.2892 0.011 7txn-a1-m1-cA_7txn-a1-m1-cB
34 7txn-a1-m1-cA 104 83 0.2727 0.2308 0.2892 0.012 7txn-a1-m1-cA_7txn-a1-m1-cB
35 3f72-a2-m1-cC 103 77 0.2955 0.2524 0.3377 0.058 3f72-a2-m1-cD_3f72-a2-m1-cC
36 4fx0-a1-m1-cB 135 60 0.1932 0.1259 0.2833 0.068 4fx0-a1-m1-cA_4fx0-a1-m1-cB
37 6j05-a1-m1-cB 90 83 0.3068 0.3000 0.3253 0.12 6j05-a1-m1-cB_6j05-a1-m1-cA
38 6j05-a1-m1-cA 101 83 0.3068 0.2673 0.3253 0.18 6j05-a1-m1-cB_6j05-a1-m1-cA
39 4fx0-a1-m1-cA 122 30 0.1364 0.0984 0.4000 0.24 4fx0-a1-m1-cA_4fx0-a1-m1-cB
40 2p4w-a1-m1-cA 197 65 0.2500 0.1117 0.3385 0.32 2p4w-a1-m1-cA_2p4w-a1-m1-cB
41 2p4w-a1-m1-cB 198 65 0.2500 0.1111 0.3385 0.34 2p4w-a1-m1-cA_2p4w-a1-m1-cB
42 3f72-a2-m1-cD 100 77 0.2727 0.2400 0.3117 0.68 3f72-a2-m1-cD_3f72-a2-m1-cC
43 2oqg-a1-m1-cB 107 64 0.2273 0.1869 0.3125 0.74 2oqg-a1-m1-cA_2oqg-a1-m1-cB, 2oqg-a1-m1-cD_2oqg-a1-m1-cB
44 6j0e-a1-m1-cB 125 47 0.1591 0.1120 0.2979 0.75 6j0e-a1-m1-cA_6j0e-a1-m1-cB
45 2oqg-a1-m1-cD 105 64 0.2273 0.1905 0.3125 0.75 2oqg-a1-m1-cC_2oqg-a1-m1-cD, 2oqg-a1-m1-cD_2oqg-a1-m1-cA, 2oqg-a1-m1-cD_2oqg-a1-m1-cB
46 2oqg-a1-m1-cC 105 64 0.2273 0.1905 0.3125 0.75 2oqg-a1-m1-cC_2oqg-a1-m1-cD
47 6j0e-a1-m1-cA 124 47 0.1591 0.1129 0.2979 0.76 6j0e-a1-m1-cA_6j0e-a1-m1-cB
48 2oqg-a1-m1-cA 107 64 0.2273 0.1869 0.3125 0.78 2oqg-a1-m1-cA_2oqg-a1-m1-cB, 2oqg-a1-m1-cD_2oqg-a1-m1-cA
49 7bhi-a1-m1-cB 440 50 0.2159 0.0432 0.3800 1.6 7bhi-a1-m1-cB_7bhi-a1-m1-cA
50 7bih-a1-m1-cA 444 50 0.2159 0.0428 0.3800 1.6 7bih-a1-m1-cB_7bih-a1-m1-cA
51 7bih-a1-m1-cB 443 50 0.2159 0.0429 0.3800 1.7 7bih-a1-m1-cB_7bih-a1-m1-cA
52 7bhi-a1-m1-cA 444 50 0.2159 0.0428 0.3800 1.7 7bhi-a1-m1-cB_7bhi-a1-m1-cA
53 4pzj-a1-m2-cA 67 19 0.1136 0.1493 0.5263 2.0 4pzj-a1-m1-cA_4pzj-a1-m2-cA
54 4pzj-a1-m1-cA 67 19 0.1136 0.1493 0.5263 2.0 4pzj-a1-m1-cA_4pzj-a1-m2-cA
55 7ped-a1-m1-cB 211 26 0.1364 0.0569 0.4615 5.2 7ped-a1-m1-cA_7ped-a1-m1-cB
56 7ped-a1-m1-cA 211 26 0.1364 0.0569 0.4615 5.2 7ped-a1-m1-cA_7ped-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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