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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=30)
DFKDLWTKLKECHDREVQGLQVKVTKLKQE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4d2h-a2-m1-cB 32 30 1.0000 0.9375 1.0000 1.24e-15 4d2h-a2-m1-cD_4d2h-a2-m1-cB
2 4d2h-a1-m1-cH 33 30 1.0000 0.9091 1.0000 1.38e-15 4d2h-a1-m1-cE_4d2h-a1-m1-cH
3 4d2h-a2-m1-cC 34 30 1.0000 0.8824 1.0000 1.49e-15 4d2h-a2-m1-cD_4d2h-a2-m1-cC
4 4d2h-a2-m1-cD 30 30 1.0000 1.0000 1.0000 1.54e-15 4d2h-a2-m1-cD_4d2h-a2-m1-cB, 4d2h-a2-m1-cD_4d2h-a2-m1-cC
5 4d2h-a1-m1-cE 30 30 1.0000 1.0000 1.0000 1.54e-15 4d2h-a1-m1-cE_4d2h-a1-m1-cH
6 7bgf-a1-m1-cB 108 18 0.6000 0.1667 1.0000 8.56e-06 7bgf-a1-m1-cB_7bgf-a1-m1-cA
7 7bgf-a1-m1-cA 112 18 0.6000 0.1607 1.0000 9.99e-06 7bgf-a1-m1-cB_7bgf-a1-m1-cA
8 4whb-a2-m2-cH 459 18 0.2667 0.0174 0.4444 5.4 4whb-a2-m1-cF_4whb-a2-m2-cH, 4whb-a2-m2-cC_4whb-a2-m2-cH
9 4whb-a2-m2-cC 459 18 0.2667 0.0174 0.4444 5.4 4whb-a2-m2-cC_4whb-a2-m2-cH
10 4whb-a2-m1-cF 459 18 0.2667 0.0174 0.4444 5.4 4whb-a2-m1-cF_4whb-a2-m2-cH
11 3ln3-a2-m2-cA 287 12 0.2333 0.0244 0.5833 6.9 3ln3-a2-m1-cA_3ln3-a2-m2-cA
12 3ln3-a2-m1-cA 287 12 0.2333 0.0244 0.5833 6.9 3ln3-a2-m1-cA_3ln3-a2-m2-cA

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Reference:
Jacob Schwartz et al.

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