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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=33)
DFKDLWTKLKECHDREVQGLQVKVTKLKQERIL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4d2h-a1-m1-cH 33 33 1.0000 1.0000 1.0000 1.11e-17 4d2h-a1-m1-cE_4d2h-a1-m1-cH
2 4d2h-a2-m1-cC 34 33 1.0000 0.9706 1.0000 1.23e-17 4d2h-a2-m1-cD_4d2h-a2-m1-cC
3 4d2h-a2-m1-cB 32 31 0.9394 0.9688 1.0000 1.88e-16 4d2h-a2-m1-cD_4d2h-a2-m1-cB
4 4d2h-a2-m1-cD 30 30 0.9091 1.0000 1.0000 1.51e-15 4d2h-a2-m1-cD_4d2h-a2-m1-cB, 4d2h-a2-m1-cD_4d2h-a2-m1-cC
5 4d2h-a1-m1-cE 30 30 0.9091 1.0000 1.0000 1.51e-15 4d2h-a1-m1-cE_4d2h-a1-m1-cH
6 7bgf-a1-m1-cB 108 21 0.6364 0.1944 1.0000 7.26e-08 7bgf-a1-m1-cB_7bgf-a1-m1-cA
7 7bgf-a1-m1-cA 112 21 0.6364 0.1875 1.0000 8.22e-08 7bgf-a1-m1-cB_7bgf-a1-m1-cA
8 5brd-a1-m1-cB 367 21 0.2727 0.0245 0.4286 5.0 5brd-a1-m1-cA_5brd-a1-m1-cB
9 5brd-a1-m1-cA 367 21 0.2727 0.0245 0.4286 5.0 5brd-a1-m1-cA_5brd-a1-m1-cB
10 4whb-a2-m2-cH 459 18 0.2424 0.0174 0.4444 6.4 4whb-a2-m1-cF_4whb-a2-m2-cH, 4whb-a2-m2-cC_4whb-a2-m2-cH
11 4whb-a2-m2-cC 459 18 0.2424 0.0174 0.4444 6.4 4whb-a2-m2-cC_4whb-a2-m2-cH
12 4whb-a2-m1-cF 459 18 0.2424 0.0174 0.4444 6.4 4whb-a2-m1-cF_4whb-a2-m2-cH
13 3ln3-a2-m2-cA 287 12 0.2121 0.0244 0.5833 8.1 3ln3-a2-m1-cA_3ln3-a2-m2-cA
14 3ln3-a2-m1-cA 287 12 0.2121 0.0244 0.5833 8.1 3ln3-a2-m1-cA_3ln3-a2-m2-cA

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Reference:
Jacob Schwartz et al.

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