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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=93)
DFSKMSIVGRIGSEFTEHTSANNNRYLKYSIASQPRQTNWYNITVFNEPQINFLTEYVRK
GALVYVEADAANYVFEGTTLSLVQKDINLLKNG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6cqk-a1-m1-cB 93 93 1.0000 1.0000 1.0000 6.68e-66 6cqk-a1-m1-cD_6cqk-a1-m1-cB
2 6cqk-a1-m1-cD 87 92 0.9247 0.9885 0.9348 9.97e-55 6cqk-a1-m1-cD_6cqk-a1-m1-cB
3 6cqo-a1-m1-cA 93 96 0.9570 0.9570 0.9271 1.24e-54 6cqo-a1-m1-cG_6cqo-a1-m1-cA
4 6cqo-a1-m1-cG 87 96 0.9032 0.9655 0.8750 2.92e-50 6cqo-a1-m1-cG_6cqo-a1-m1-cA
5 3ulp-a1-m1-cD 113 76 0.1935 0.1593 0.2368 3.96e-05 3ulp-a1-m1-cD_3ulp-a1-m1-cA, 3ulp-a1-m1-cD_3ulp-a1-m1-cB, 3ulp-a1-m1-cD_3ulp-a1-m1-cC
6 3ulp-a1-m1-cB 114 77 0.1935 0.1579 0.2338 5.24e-05 3ulp-a1-m1-cD_3ulp-a1-m1-cB
7 3lgj-a1-m1-cB 97 82 0.1935 0.1856 0.2195 8.00e-05 3lgj-a1-m1-cA_3lgj-a1-m1-cB
8 3ulp-a1-m1-cA 114 78 0.1935 0.1579 0.2308 8.49e-05 3ulp-a1-m1-cD_3ulp-a1-m1-cA
9 3ulp-a1-m1-cC 116 78 0.1935 0.1552 0.2308 9.21e-05 3ulp-a1-m1-cD_3ulp-a1-m1-cC
10 3pgz-a1-m1-cA 109 73 0.2043 0.1743 0.2603 1.10e-04 3pgz-a1-m1-cA_3pgz-a1-m1-cB
11 3pgz-a1-m1-cB 114 32 0.1290 0.1053 0.3750 3.39e-04 3pgz-a1-m1-cA_3pgz-a1-m1-cB
12 3lgj-a1-m1-cA 95 83 0.2043 0.2000 0.2289 0.003 3lgj-a1-m1-cA_3lgj-a1-m1-cB
13 3tqy-a1-m1-cD 96 67 0.2043 0.1979 0.2836 0.005 3tqy-a1-m1-cD_3tqy-a1-m1-cC
14 3ic9-a2-m1-cD 469 83 0.2688 0.0533 0.3012 0.010 3ic9-a2-m1-cD_3ic9-a2-m1-cC
15 3ic9-a2-m1-cC 471 83 0.2688 0.0531 0.3012 0.011 3ic9-a2-m1-cD_3ic9-a2-m1-cC
16 2dud-a2-m2-cB 92 68 0.1935 0.1957 0.2647 0.011 2dud-a2-m2-cB_2dud-a2-m1-cA, 2dud-a2-m2-cB_2dud-a2-m2-cA
17 1kaw-a1-m1-cD 96 65 0.2151 0.2083 0.3077 0.028 1kaw-a1-m1-cC_1kaw-a1-m1-cD
18 1kaw-a1-m1-cC 96 65 0.2151 0.2083 0.3077 0.028 1kaw-a1-m1-cA_1kaw-a1-m1-cC, 1kaw-a1-m1-cC_1kaw-a1-m1-cD
19 1kaw-a1-m1-cA 96 65 0.2151 0.2083 0.3077 0.028 1kaw-a1-m1-cA_1kaw-a1-m1-cC
20 1o4s-a1-m1-cB 384 63 0.1935 0.0469 0.2857 0.056 1o4s-a1-m1-cA_1o4s-a1-m1-cB
21 1o4s-a1-m1-cA 375 63 0.1935 0.0480 0.2857 0.058 1o4s-a1-m1-cA_1o4s-a1-m1-cB
22 4mz9-a1-m1-cD 114 50 0.1505 0.1228 0.2800 0.059 4mz9-a1-m1-cB_4mz9-a1-m1-cD, 4mz9-a1-m1-cC_4mz9-a1-m1-cD
23 4mz9-a1-m1-cC 114 50 0.1505 0.1228 0.2800 0.059 4mz9-a1-m1-cB_4mz9-a1-m1-cC, 4mz9-a1-m1-cC_4mz9-a1-m1-cD
24 4mz9-a1-m1-cB 114 50 0.1505 0.1228 0.2800 0.059 4mz9-a1-m1-cB_4mz9-a1-m1-cC, 4mz9-a1-m1-cB_4mz9-a1-m1-cD
25 1sru-a1-m1-cA 100 67 0.1935 0.1800 0.2687 0.064 1sru-a1-m1-cA_1sru-a1-m1-cD, 1sru-a1-m1-cC_1sru-a1-m1-cA
26 1sru-a1-m1-cD 101 67 0.1935 0.1782 0.2687 0.067 1sru-a1-m1-cA_1sru-a1-m1-cD
27 2dud-a2-m2-cA 95 71 0.1828 0.1789 0.2394 0.069 2dud-a2-m2-cB_2dud-a2-m2-cA
28 2dud-a2-m1-cA 95 71 0.1828 0.1789 0.2394 0.069 2dud-a2-m2-cB_2dud-a2-m1-cA
29 1sru-a1-m1-cC 96 65 0.1828 0.1771 0.2615 0.15 1sru-a1-m1-cC_1sru-a1-m1-cA
30 3tqy-a1-m1-cC 106 77 0.2258 0.1981 0.2727 0.27 3tqy-a1-m1-cD_3tqy-a1-m1-cC
31 7f25-a1-m1-cB 106 32 0.1290 0.1132 0.3750 0.31 7f25-a1-m1-cA_7f25-a1-m1-cB
32 7f25-a1-m1-cA 106 32 0.1290 0.1132 0.3750 0.31 7f25-a1-m1-cA_7f25-a1-m1-cB
33 5odn-a1-m1-cH 99 65 0.1505 0.1414 0.2154 1.0 5odn-a1-m1-cA_5odn-a1-m1-cH
34 5odn-a1-m1-cA 99 65 0.1505 0.1414 0.2154 1.0 5odn-a1-m1-cA_5odn-a1-m1-cD, 5odn-a1-m1-cA_5odn-a1-m1-cH
35 2ztu-a1-m1-cA 235 44 0.1398 0.0553 0.2955 2.7 2ztu-a1-m1-cB_2ztu-a1-m1-cA
36 2ztu-a1-m1-cB 207 44 0.1398 0.0628 0.2955 3.2 2ztu-a1-m1-cB_2ztu-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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