HomodimerDB

Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

HomodimerDB

>protein (length=88)
DGEEDEIVQREDGSWLVDGVSLDRFREFFELEAPLPGEAGGNIHTLAGVLYQLGRVPSVT
DRFEWNGFSFEVVDDRTRVDKILVQRHH

#	Hit	Hit length	Aligned length	Identity (normalized by query)	Identity (normalized by hit)	Identity (normalized by aligned length)	E-value	Dimers
1	3ded-a2-m1-cC	88	88	1.0000	1.0000	1.0000	6.04e-60	3ded-a2-m1-cD_3ded-a2-m1-cC
2	3ded-a2-m1-cD	83	83	0.9432	1.0000	1.0000	4.52e-56	3ded-a2-m1-cD_3ded-a2-m1-cC
3	2pls-a6-m2-cL	83	80	0.3864	0.4096	0.4250	7.93e-15	2pls-a6-m1-cL_2pls-a6-m2-cL
4	2pls-a6-m1-cL	83	80	0.3864	0.4096	0.4250	7.93e-15	2pls-a6-m1-cL_2pls-a6-m2-cL
5	2pls-a1-m1-cC	83	80	0.3864	0.4096	0.4250	7.93e-15	2pls-a1-m1-cB_2pls-a1-m1-cC
6	2pls-a1-m1-cB	83	80	0.3864	0.4096	0.4250	7.93e-15	2pls-a1-m1-cB_2pls-a1-m1-cC
7	2oai-a1-m2-cA	77	85	0.3977	0.4545	0.4118	3.99e-13	2oai-a1-m1-cA_2oai-a1-m2-cA
8	2oai-a1-m1-cA	77	85	0.3977	0.4545	0.4118	3.99e-13	2oai-a1-m1-cA_2oai-a1-m2-cA
9	2p13-a1-m1-cA	84	80	0.2841	0.2976	0.3125	0.004	2p13-a1-m1-cB_2p13-a1-m1-cA
10	2p13-a1-m1-cB	82	80	0.2727	0.2927	0.3000	0.005	2p13-a1-m1-cB_2p13-a1-m1-cA
11	6dcl-a1-m1-cB	171	45	0.1705	0.0877	0.3333	0.018	6dcl-a1-m1-cB_6dcl-a1-m1-cA
12	6dcl-a1-m1-cA	182	50	0.2045	0.0989	0.3600	0.16	6dcl-a1-m1-cB_6dcl-a1-m1-cA
13	7wm3-a2-m1-cD	179	50	0.1932	0.0950	0.3400	0.92	7wm3-a2-m1-cB_7wm3-a2-m1-cD
14	7wm3-a2-m1-cB	179	50	0.1932	0.0950	0.3400	0.92	7wm3-a2-m1-cB_7wm3-a2-m1-cD
15	2bqq-a1-m2-cA	96	36	0.1818	0.1667	0.4444	1.2	2bqq-a1-m1-cA_2bqq-a1-m2-cA
16	2bqq-a1-m1-cA	96	36	0.1818	0.1667	0.4444	1.2	2bqq-a1-m1-cA_2bqq-a1-m2-cA
17	7lvt-a1-m1-cD	719	39	0.1477	0.0181	0.3333	2.5	7lvt-a1-m1-cA_7lvt-a1-m1-cD, 7lvt-a1-m1-cB_7lvt-a1-m1-cD, 7lvt-a1-m1-cC_7lvt-a1-m1-cD
18	7lvt-a1-m1-cC	719	39	0.1477	0.0181	0.3333	2.5	7lvt-a1-m1-cC_7lvt-a1-m1-cD
19	7lvt-a1-m1-cB	719	39	0.1477	0.0181	0.3333	2.5	7lvt-a1-m1-cB_7lvt-a1-m1-cD
20	7lvt-a1-m1-cA	719	39	0.1477	0.0181	0.3333	2.5	7lvt-a1-m1-cA_7lvt-a1-m1-cD
21	6kse-a1-m1-cB	607	43	0.1932	0.0280	0.3953	3.3	6kse-a1-m1-cA_6kse-a1-m1-cB
22	6kse-a1-m1-cA	607	43	0.1932	0.0280	0.3953	3.3	6kse-a1-m1-cA_6kse-a1-m1-cB
23	5yx3-a1-m1-cB	214	34	0.1364	0.0561	0.3529	5.6	5yx3-a1-m1-cA_5yx3-a1-m1-cB
24	5yx3-a1-m1-cA	214	34	0.1364	0.0561	0.3529	5.6	5yx3-a1-m1-cA_5yx3-a1-m1-cB
25	6dbp-a1-m1-cA	84	22	0.1250	0.1310	0.5000	7.4	6dbp-a1-m1-cB_6dbp-a1-m1-cA
26	6dbp-a1-m1-cB	82	22	0.1250	0.1341	0.5000	7.7	6dbp-a1-m1-cB_6dbp-a1-m1-cA
27	5zdp-a1-m1-cB	263	65	0.2159	0.0722	0.2923	8.8	5zdp-a1-m1-cB_5zdp-a1-m1-cA
28	5zdp-a1-m1-cA	264	65	0.2159	0.0720	0.2923	9.2	5zdp-a1-m1-cB_5zdp-a1-m1-cA

[Back]

Reference:
Jacob Schwartz et al.