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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=61)
DKKELFDTVINLEEQIGSLYRQLGDLKQHIGEMIEENHHLQLENKHLRKRLDDTTQQIEK
F

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5dol-a1-m2-cB 62 61 1.0000 0.9839 1.0000 1.94e-38 5dol-a1-m1-cA_5dol-a1-m2-cB, 5dol-a1-m1-cB_5dol-a1-m2-cB, 5dol-a1-m2-cA_5dol-a1-m2-cB
2 5dol-a1-m1-cB 62 61 1.0000 0.9839 1.0000 1.94e-38 5dol-a1-m1-cB_5dol-a1-m2-cB
3 5dol-a1-m2-cA 61 61 1.0000 1.0000 1.0000 2.13e-38 5dol-a1-m2-cA_5dol-a1-m2-cB
4 5dol-a1-m1-cA 61 61 1.0000 1.0000 1.0000 2.13e-38 5dol-a1-m1-cA_5dol-a1-m2-cB
5 8glv-a1-m1-cCq 1076 48 0.2787 0.0158 0.3542 0.052 8glv-a1-m1-cCp_8glv-a1-m1-cCq
6 8glv-a1-m1-cCp 1075 48 0.2787 0.0158 0.3542 0.052 8glv-a1-m1-cCp_8glv-a1-m1-cCq
7 3bas-a1-m1-cA 80 48 0.2623 0.2000 0.3333 0.83 3bas-a1-m1-cA_3bas-a1-m1-cB
8 3bas-a1-m1-cB 87 48 0.2623 0.1839 0.3333 0.89 3bas-a1-m1-cA_3bas-a1-m1-cB
9 1dip-a1-m1-cB 77 36 0.2295 0.1818 0.3889 2.4 1dip-a1-m1-cA_1dip-a1-m1-cB
10 1dip-a1-m1-cA 77 36 0.2295 0.1818 0.3889 2.4 1dip-a1-m1-cA_1dip-a1-m1-cB
11 3m1r-a3-m1-cF 309 28 0.1311 0.0259 0.2857 7.0 3m1r-a3-m1-cE_3m1r-a3-m1-cF
12 3m1r-a1-m1-cF 309 28 0.1311 0.0259 0.2857 7.0 3m1r-a1-m1-cC_3m1r-a1-m1-cF
13 3m1r-a1-m1-cD 313 28 0.1311 0.0256 0.2857 7.0 3m1r-a1-m1-cB_3m1r-a1-m1-cD
14 2dm9-a1-m1-cB 118 41 0.1967 0.1017 0.2927 7.2 2dm9-a1-m1-cA_2dm9-a1-m1-cB
15 2dm9-a1-m1-cA 118 41 0.1967 0.1017 0.2927 7.2 2dm9-a1-m1-cA_2dm9-a1-m1-cB
16 3m1r-a3-m1-cE 309 28 0.1311 0.0259 0.2857 7.5 3m1r-a3-m1-cE_3m1r-a3-m1-cF
17 3m1r-a1-m1-cC 309 28 0.1311 0.0259 0.2857 7.5 3m1r-a1-m1-cC_3m1r-a1-m1-cF
18 3m1r-a1-m1-cB 309 28 0.1311 0.0259 0.2857 7.5 3m1r-a1-m1-cB_3m1r-a1-m1-cD
19 4cvu-a1-m2-cA 913 16 0.1639 0.0110 0.6250 7.6 4cvu-a1-m1-cA_4cvu-a1-m2-cA
20 4cvu-a1-m1-cA 913 16 0.1639 0.0110 0.6250 7.6 4cvu-a1-m1-cA_4cvu-a1-m2-cA
21 4xbf-a1-m4-cA 666 20 0.1475 0.0135 0.4500 8.1 4xbf-a1-m2-cA_4xbf-a1-m4-cA, 4xbf-a1-m3-cA_4xbf-a1-m4-cA
22 4xbf-a1-m3-cA 666 20 0.1475 0.0135 0.4500 8.1 4xbf-a1-m3-cA_4xbf-a1-m4-cA
23 4xbf-a1-m2-cA 666 20 0.1475 0.0135 0.4500 8.1 4xbf-a1-m2-cA_4xbf-a1-m4-cA

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Reference:
Jacob Schwartz et al.

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