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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=40)
DNCCILDERFGSYCPTTCGIADFLSTYQTKVDKDLQSLED

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2a45-a1-m1-cL 44 40 1.0000 0.9091 1.0000 2.17e-24 2a45-a1-m1-cI_2a45-a1-m1-cL
2 2a45-a1-m1-cI 40 40 1.0000 1.0000 1.0000 3.55e-24 2a45-a1-m1-cI_2a45-a1-m1-cL
3 3ghg-a2-m1-cI 394 40 1.0000 0.1015 1.0000 8.73e-23 3ghg-a2-m1-cL_3ghg-a2-m1-cI
4 3ghg-a2-m1-cL 391 40 1.0000 0.1023 1.0000 1.02e-22 3ghg-a2-m1-cL_3ghg-a2-m1-cI
5 1jy2-a1-m1-cS 47 39 0.8500 0.7234 0.8718 7.87e-21 1jy2-a1-m1-cP_1jy2-a1-m1-cS
6 1jy2-a1-m1-cP 44 39 0.8500 0.7727 0.8718 1.08e-20 1jy2-a1-m1-cP_1jy2-a1-m1-cS
7 1m1j-a1-m1-cF 389 39 0.6500 0.0668 0.6667 1.23e-13 1m1j-a1-m1-cF_1m1j-a1-m1-cC
8 1m1j-a1-m1-cC 390 39 0.6500 0.0667 0.6667 1.23e-13 1m1j-a1-m1-cF_1m1j-a1-m1-cC
9 1otk-a1-m1-cB 244 14 0.1750 0.0287 0.5000 1.7 1otk-a1-m1-cA_1otk-a1-m1-cB
10 1otk-a1-m1-cA 244 14 0.1750 0.0287 0.5000 1.7 1otk-a1-m1-cA_1otk-a1-m1-cB
11 3pvt-a1-m2-cC 248 14 0.1750 0.0282 0.5000 1.7 3pvt-a1-m1-cC_3pvt-a1-m2-cC
12 3pvt-a1-m1-cC 248 14 0.1750 0.0282 0.5000 1.7 3pvt-a1-m1-cC_3pvt-a1-m2-cC

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Reference:
Jacob Schwartz et al.

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