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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=75)
DQLTNDKARVEVERDNLAEDIRLREKLQEELQREEAENTLQSFRQDVDNASLARLDLERK
VESLQEEIAFLKKLH

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4yv3-a1-m1-cA 75 75 1.0000 1.0000 1.0000 4.64e-46 4yv3-a1-m1-cC_4yv3-a1-m1-cA
2 3uf1-a2-m1-cD 108 75 1.0000 0.6944 1.0000 7.49e-46 3uf1-a2-m1-cC_3uf1-a2-m1-cD
3 3uf1-a2-m1-cC 105 75 1.0000 0.7143 1.0000 7.54e-46 3uf1-a2-m1-cC_3uf1-a2-m1-cD
4 4ypc-a1-m3-cA 83 77 1.0000 0.9036 0.9740 1.55e-42 4ypc-a1-m2-cA_4ypc-a1-m3-cA
5 4ypc-a1-m2-cA 83 77 1.0000 0.9036 0.9740 1.55e-42 4ypc-a1-m2-cA_4ypc-a1-m3-cA
6 5whf-a1-m2-cE 86 76 0.9867 0.8605 0.9737 3.14e-41 5whf-a1-m2-cH_5whf-a1-m2-cE
7 5whf-a1-m2-cG 88 76 0.9867 0.8409 0.9737 3.56e-41 5whf-a1-m2-cD_5whf-a1-m2-cG, 5whf-a1-m2-cH_5whf-a1-m2-cG
8 5whf-a1-m2-cD 85 76 0.9867 0.8706 0.9737 4.19e-41 5whf-a1-m2-cD_5whf-a1-m2-cG
9 5whf-a1-m2-cH 84 75 0.9733 0.8690 0.9733 1.52e-40 5whf-a1-m2-cH_5whf-a1-m2-cE, 5whf-a1-m2-cH_5whf-a1-m2-cG
10 4yv3-a1-m1-cC 61 61 0.8133 1.0000 1.0000 6.91e-36 4yv3-a1-m1-cC_4yv3-a1-m1-cA
11 6a9p-a2-m1-cF 100 77 0.6533 0.4900 0.6364 1.43e-24 6a9p-a2-m1-cF_6a9p-a2-m1-cE
12 6a9p-a1-m1-cH 101 77 0.6533 0.4851 0.6364 1.57e-24 6a9p-a1-m1-cH_6a9p-a1-m1-cA
13 6a9p-a2-m1-cC 104 77 0.6533 0.4712 0.6364 1.86e-24 6a9p-a2-m1-cE_6a9p-a2-m1-cC
14 6a9p-a2-m1-cE 102 77 0.6533 0.4804 0.6364 2.03e-24 6a9p-a2-m1-cE_6a9p-a2-m1-cC, 6a9p-a2-m1-cF_6a9p-a2-m1-cE
15 6a9p-a1-m1-cA 103 77 0.6533 0.4757 0.6364 2.36e-24 6a9p-a1-m1-cH_6a9p-a1-m1-cA
16 6e2j-a2-m4-cA 107 77 0.3733 0.2617 0.3636 1.51e-09 6e2j-a2-m1-cA_6e2j-a2-m4-cA, 6e2j-a2-m2-cA_6e2j-a2-m4-cA, 6e2j-a2-m3-cA_6e2j-a2-m4-cA
17 6e2j-a2-m3-cA 107 77 0.3733 0.2617 0.3636 1.51e-09 6e2j-a2-m3-cA_6e2j-a2-m4-cA
18 6e2j-a2-m2-cA 107 77 0.3733 0.2617 0.3636 1.51e-09 6e2j-a2-m2-cA_6e2j-a2-m4-cA
19 6e2j-a2-m1-cA 107 77 0.3733 0.2617 0.3636 1.51e-09 6e2j-a2-m1-cA_6e2j-a2-m4-cA
20 3s4r-a1-m1-cA 88 28 0.3600 0.3068 0.9643 2.35e-09 3s4r-a1-m1-cA_3s4r-a1-m1-cB
21 3s4r-a1-m1-cB 91 28 0.3600 0.2967 0.9643 2.43e-09 3s4r-a1-m1-cA_3s4r-a1-m1-cB
22 6e2j-a2-m4-cB 104 76 0.3867 0.2788 0.3816 3.66e-07 6e2j-a2-m2-cB_6e2j-a2-m4-cB
23 6e2j-a2-m2-cB 104 76 0.3867 0.2788 0.3816 3.66e-07 6e2j-a2-m2-cB_6e2j-a2-m4-cB
24 3h5q-a1-m2-cA 420 34 0.1733 0.0310 0.3824 3.0 3h5q-a1-m1-cA_3h5q-a1-m2-cA
25 3h5q-a1-m1-cA 420 34 0.1733 0.0310 0.3824 3.0 3h5q-a1-m1-cA_3h5q-a1-m2-cA
26 6mi3-a1-m1-cA 122 44 0.2667 0.1639 0.4545 3.1 6mi3-a1-m1-cA_6mi3-a1-m1-cB
27 6mi3-a1-m1-cB 124 44 0.2667 0.1613 0.4545 3.2 6mi3-a1-m1-cA_6mi3-a1-m1-cB
28 4ihs-a3-m1-cA 89 29 0.1333 0.1124 0.3448 3.6 4ihs-a3-m1-cA_4ihs-a3-m1-cC
29 4ihs-a3-m1-cC 90 29 0.1333 0.1111 0.3448 3.7 4ihs-a3-m1-cA_4ihs-a3-m1-cC
30 3k1m-a4-m1-cA 300 29 0.1333 0.0333 0.3448 5.9 3k1m-a4-m1-cA_3k1m-a4-m3-cB
31 3k1m-a2-m2-cA 300 29 0.1333 0.0333 0.3448 5.9 3k1m-a2-m1-cA_3k1m-a2-m2-cA
32 3k1m-a2-m1-cA 300 29 0.1333 0.0333 0.3448 5.9 3k1m-a2-m1-cA_3k1m-a2-m2-cA, 3k1m-a2-m1-cA_3k1m-a2-m4-cB
33 3k1m-a1-m1-cA 300 29 0.1333 0.0333 0.3448 5.9 3k1m-a1-m1-cA_3k1m-a1-m1-cB
34 6hk5-a4-m1-cF 59 38 0.1733 0.2203 0.3421 6.6 6hk5-a4-m1-cF_6hk5-a4-m1-cD
35 1rfz-a1-m1-cD 153 25 0.1600 0.0784 0.4800 6.7 1rfz-a1-m1-cD_1rfz-a1-m1-cA, 1rfz-a1-m1-cD_1rfz-a1-m1-cB, 1rfz-a1-m1-cD_1rfz-a1-m1-cC
36 3fvt-a2-m1-cI 317 31 0.1733 0.0410 0.4194 6.8 3fvt-a2-m1-cI_3fvt-a2-m1-cN
37 3fvt-a2-m1-cH 317 31 0.1733 0.0410 0.4194 6.8 3fvt-a2-m1-cH_3fvt-a2-m1-cN
38 1rfz-a1-m1-cB 161 25 0.1600 0.0745 0.4800 6.8 1rfz-a1-m1-cD_1rfz-a1-m1-cB
39 1rfz-a1-m1-cA 161 25 0.1600 0.0745 0.4800 6.8 1rfz-a1-m1-cD_1rfz-a1-m1-cA
40 1rfz-a1-m1-cC 159 25 0.1600 0.0755 0.4800 6.8 1rfz-a1-m1-cD_1rfz-a1-m1-cC
41 3fvt-a2-m1-cN 318 31 0.1733 0.0409 0.4194 6.9 3fvt-a2-m1-cH_3fvt-a2-m1-cN, 3fvt-a2-m1-cI_3fvt-a2-m1-cN, 3fvt-a2-m1-cM_3fvt-a2-m1-cN
42 3fvt-a2-m1-cM 318 31 0.1733 0.0409 0.4194 6.9 3fvt-a2-m1-cM_3fvt-a2-m1-cN
43 6hk5-a2-m1-cC 61 38 0.1733 0.2131 0.3421 9.2 6hk5-a2-m1-cC_6hk5-a2-m1-cB

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Reference:
Jacob Schwartz et al.

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