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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=88)
DRFLEELPEVAESFKNFREAVRSEGKLTEREKLLISVACSVAVRCDACTRRHAEEALEAG
ITEGELAEAAAVAALIRAGSANTASAIF

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3bey-a1-m1-cB 88 88 1.0000 1.0000 1.0000 2.66e-56 3bey-a1-m1-cB_3bey-a1-m1-cF
2 3bey-a1-m1-cD 93 88 1.0000 0.9462 1.0000 3.20e-56 3bey-a1-m1-cF_3bey-a1-m1-cD
3 3bey-a1-m1-cF 91 88 1.0000 0.9670 1.0000 3.40e-56 3bey-a1-m1-cB_3bey-a1-m1-cF, 3bey-a1-m1-cC_3bey-a1-m1-cF, 3bey-a1-m1-cF_3bey-a1-m1-cD
4 3bey-a1-m1-cC 91 88 1.0000 0.9670 1.0000 3.40e-56 3bey-a1-m1-cC_3bey-a1-m1-cF
5 3bey-a1-m1-cA 88 87 0.9886 0.9886 1.0000 3.87e-55 3bey-a1-m1-cE_3bey-a1-m1-cA
6 3bey-a1-m1-cE 86 85 0.9659 0.9884 1.0000 2.42e-53 3bey-a1-m1-cE_3bey-a1-m1-cA
7 1vke-a1-m1-cB 101 67 0.2727 0.2376 0.3582 2.08e-06 1vke-a1-m1-cB_1vke-a1-m1-cA, 1vke-a1-m1-cF_1vke-a1-m1-cB
8 1vke-a1-m1-cF 97 67 0.2727 0.2474 0.3582 2.20e-06 1vke-a1-m1-cF_1vke-a1-m1-cB
9 1p8c-a1-m1-cF 115 67 0.2727 0.2087 0.3582 3.98e-06 1p8c-a1-m1-cF_1p8c-a1-m1-cE
10 1vke-a1-m1-cA 117 67 0.2727 0.2051 0.3582 4.15e-06 1vke-a1-m1-cB_1vke-a1-m1-cA
11 1p8c-a1-m1-cE 119 67 0.2727 0.2017 0.3582 4.66e-06 1p8c-a1-m1-cC_1p8c-a1-m1-cE, 1p8c-a1-m1-cF_1p8c-a1-m1-cE
12 1p8c-a1-m1-cC 119 67 0.2727 0.2017 0.3582 4.66e-06 1p8c-a1-m1-cC_1p8c-a1-m1-cE
13 3d7i-a1-m2-cB 93 81 0.2614 0.2473 0.2840 0.029 3d7i-a1-m1-cA_3d7i-a1-m2-cB, 3d7i-a1-m2-cC_3d7i-a1-m2-cB
14 3d7i-a1-m2-cA 92 81 0.2614 0.2500 0.2840 0.029 3d7i-a1-m2-cC_3d7i-a1-m2-cA
15 3d7i-a1-m1-cA 92 81 0.2614 0.2500 0.2840 0.029 3d7i-a1-m1-cA_3d7i-a1-m2-cB, 3d7i-a1-m2-cC_3d7i-a1-m1-cA
16 3d7i-a1-m2-cC 91 81 0.2614 0.2527 0.2840 0.030 3d7i-a1-m2-cC_3d7i-a1-m1-cA, 3d7i-a1-m2-cC_3d7i-a1-m2-cA, 3d7i-a1-m2-cC_3d7i-a1-m2-cB
17 2oyo-a1-m3-cB 184 59 0.2159 0.1033 0.3220 0.58 2oyo-a1-m2-cA_2oyo-a1-m3-cB, 2oyo-a1-m3-cA_2oyo-a1-m3-cB
18 2oyo-a1-m3-cA 184 59 0.2159 0.1033 0.3220 0.58 2oyo-a1-m3-cA_2oyo-a1-m3-cB
19 2oyo-a1-m2-cA 184 59 0.2159 0.1033 0.3220 0.58 2oyo-a1-m2-cA_2oyo-a1-m3-cB
20 5w48-a1-m1-cA 452 69 0.1818 0.0354 0.2319 1.3 5w48-a1-m1-cB_5w48-a1-m1-cA
21 5w48-a1-m1-cB 448 69 0.1818 0.0357 0.2319 1.3 5w48-a1-m1-cB_5w48-a1-m1-cA
22 4f7r-a1-m1-cA 236 45 0.1705 0.0636 0.3333 2.9 4f7r-a1-m1-cA_4f7r-a1-m1-cB
23 4f7r-a1-m1-cB 237 45 0.1705 0.0633 0.3333 3.0 4f7r-a1-m1-cA_4f7r-a1-m1-cB
24 6k40-a6-m1-cJ 185 40 0.1477 0.0703 0.3250 4.6 6k40-a6-m1-cI_6k40-a6-m1-cJ
25 6k40-a6-m1-cI 185 40 0.1477 0.0703 0.3250 4.6 6k40-a6-m1-cI_6k40-a6-m1-cJ
26 6w1n-a1-m1-cH 3719 31 0.1364 0.0032 0.3871 5.9 6w1n-a1-m1-cF_6w1n-a1-m1-cH
27 6w1n-a1-m1-cF 3719 31 0.1364 0.0032 0.3871 5.9 6w1n-a1-m1-cF_6w1n-a1-m1-cH
28 6x35-a1-m1-cK 3801 31 0.1364 0.0032 0.3871 6.0 6x35-a1-m1-cH_6x35-a1-m1-cK
29 6x35-a1-m1-cH 3801 31 0.1364 0.0032 0.3871 6.0 6x35-a1-m1-cH_6x35-a1-m1-cK
30 6x34-a1-m1-cH 3715 31 0.1364 0.0032 0.3871 6.0 6x34-a1-m1-cF_6x34-a1-m1-cH
31 6x34-a1-m1-cF 3715 31 0.1364 0.0032 0.3871 6.0 6x34-a1-m1-cF_6x34-a1-m1-cH
32 2xme-a5-m1-cI 199 45 0.1364 0.0603 0.2667 6.9 2xme-a5-m1-cI_2xme-a5-m1-cJ
33 2xme-a5-m1-cJ 200 45 0.1364 0.0600 0.2667 8.0 2xme-a5-m1-cI_2xme-a5-m1-cJ
34 4mnd-a1-m2-cA 408 46 0.1364 0.0294 0.2609 8.1 4mnd-a1-m1-cA_4mnd-a1-m2-cA
35 4mnd-a1-m1-cA 408 46 0.1364 0.0294 0.2609 8.1 4mnd-a1-m1-cA_4mnd-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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