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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=93)
DSDNWMGRAKEIGNGGWDQFQFLFFDPNGYLYAVSNDKLYKASPPQSDTDNWIARATEIG
SGGWSGFKFLFFHPNGYLYAVRGQRFYKALPPV

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3kif-a3-m1-cI 94 93 1.0000 0.9894 1.0000 7.60e-66 3kif-a3-m1-cH_3kif-a3-m1-cI
2 3kif-a3-m1-cI 94 47 0.3333 0.3298 0.6596 1.00e-16 3kif-a3-m1-cH_3kif-a3-m1-cI
3 3kif-a1-m1-cA 93 93 1.0000 1.0000 1.0000 1.13e-65 3kif-a1-m1-cG_3kif-a1-m1-cA
4 3kif-a3-m1-cF 92 92 0.9892 1.0000 1.0000 6.50e-65 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cF
5 3kif-a3-m1-cF 92 45 0.3226 0.3261 0.6667 1.89e-16 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cF
6 3kif-a3-m1-cJ 93 90 0.9677 0.9677 1.0000 1.43e-63 3kif-a3-m1-cG_3kif-a3-m1-cJ, 3kif-a3-m1-cH_3kif-a3-m1-cJ
7 3kif-a3-m1-cJ 93 48 0.3333 0.3333 0.6458 5.20e-17 3kif-a3-m1-cG_3kif-a3-m1-cJ, 3kif-a3-m1-cH_3kif-a3-m1-cJ
8 3kif-a3-m1-cG 88 88 0.9462 1.0000 1.0000 7.31e-62 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cG_3kif-a3-m1-cJ
9 3kif-a3-m1-cG 88 45 0.3226 0.3409 0.6667 1.52e-16 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cG_3kif-a3-m1-cJ
10 3kif-a1-m1-cG 88 88 0.9462 1.0000 1.0000 7.31e-62 3kif-a1-m1-cG_3kif-a1-m1-cA
11 3kif-a1-m1-cG 88 45 0.3226 0.3409 0.6667 1.52e-16 3kif-a1-m1-cG_3kif-a1-m1-cA
12 3kif-a3-m1-cH 85 84 0.9032 0.9882 1.0000 1.96e-58 3kif-a3-m1-cH_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cI, 3kif-a3-m1-cH_3kif-a3-m1-cJ
13 3kif-a3-m1-cH 85 47 0.3333 0.3647 0.6596 5.32e-17 3kif-a3-m1-cH_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cI, 3kif-a3-m1-cH_3kif-a3-m1-cJ
14 3kih-a1-m1-cB 95 63 0.6022 0.5895 0.8889 1.37e-36 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cB
15 3kih-a1-m1-cB 95 77 0.5054 0.4947 0.6104 1.26e-30 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cB
16 3kih-a1-m1-cC 91 59 0.5699 0.5824 0.8983 2.02e-34 3kih-a1-m1-cA_3kih-a1-m1-cC, 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC
17 3kih-a1-m1-cC 91 77 0.4946 0.5055 0.5974 7.61e-28 3kih-a1-m1-cA_3kih-a1-m1-cC, 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC
18 3kih-a1-m1-cC 91 14 0.0968 0.0989 0.6429 5.5 3kih-a1-m1-cA_3kih-a1-m1-cC, 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC
19 3kih-a1-m1-cD 91 59 0.5591 0.5714 0.8814 7.06e-34 3kih-a1-m1-cE_3kih-a1-m1-cD
20 3kih-a1-m1-cD 91 77 0.5054 0.5165 0.6104 1.27e-30 3kih-a1-m1-cE_3kih-a1-m1-cD
21 3kih-a1-m1-cE 90 58 0.5591 0.5778 0.8966 8.92e-34 3kih-a1-m1-cE_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC, 3kih-a1-m1-cE_3kih-a1-m1-cD
22 3kih-a1-m1-cE 90 77 0.4946 0.5111 0.5974 8.81e-28 3kih-a1-m1-cE_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC, 3kih-a1-m1-cE_3kih-a1-m1-cD
23 3kih-a1-m1-cE 90 13 0.0968 0.1000 0.6923 6.6 3kih-a1-m1-cE_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC, 3kih-a1-m1-cE_3kih-a1-m1-cD
24 3kih-a1-m1-cA 90 58 0.5591 0.5778 0.8966 8.92e-34 3kih-a1-m1-cA_3kih-a1-m1-cC
25 3kih-a1-m1-cA 90 77 0.4946 0.5111 0.5974 8.81e-28 3kih-a1-m1-cA_3kih-a1-m1-cC
26 3kih-a1-m1-cA 90 13 0.0968 0.1000 0.6923 6.6 3kih-a1-m1-cA_3kih-a1-m1-cC
27 7vee-a1-m2-cA 828 52 0.1935 0.0217 0.3462 4.1 7vee-a1-m1-cA_7vee-a1-m2-cA
28 7vee-a1-m1-cA 828 52 0.1935 0.0217 0.3462 4.1 7vee-a1-m1-cA_7vee-a1-m2-cA
29 7t2p-a1-m3-cA 493 65 0.1828 0.0345 0.2615 4.8 7t2p-a1-m2-cA_7t2p-a1-m3-cA
30 7t2p-a1-m2-cA 493 65 0.1828 0.0345 0.2615 4.8 7t2p-a1-m2-cA_7t2p-a1-m3-cA
31 1g8k-a6-m1-cC 822 80 0.2258 0.0255 0.2625 4.9 1g8k-a6-m1-cA_1g8k-a6-m1-cC
32 1g8k-a6-m1-cA 822 80 0.2258 0.0255 0.2625 4.9 1g8k-a6-m1-cA_1g8k-a6-m1-cC
33 5w4a-a2-m1-cD 210 26 0.1183 0.0524 0.4231 5.0 5w4a-a2-m1-cD_5w4a-a2-m1-cB
34 5w4a-a2-m1-cB 212 26 0.1183 0.0519 0.4231 5.2 5w4a-a2-m1-cD_5w4a-a2-m1-cB

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Reference:
Jacob Schwartz et al.

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