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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=94)
DSDNWMGRAKEIGNGGWDQFQFLFFDPNGYLYAVSNDKLYKASPPQSDTDNWIARATEIG
SGGWSGFKFLFFHPNGYLYAVRGQRFYKALPPVS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3kif-a3-m1-cI 94 94 1.0000 1.0000 1.0000 2.05e-66 3kif-a3-m1-cH_3kif-a3-m1-cI
2 3kif-a1-m1-cA 93 93 0.9894 1.0000 1.0000 7.69e-66 3kif-a1-m1-cG_3kif-a1-m1-cA
3 3kif-a1-m1-cA 93 47 0.3298 0.3333 0.6596 1.01e-16 3kif-a1-m1-cG_3kif-a1-m1-cA
4 3kif-a3-m1-cF 92 92 0.9787 1.0000 1.0000 5.03e-65 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cF
5 3kif-a3-m1-cF 92 45 0.3191 0.3261 0.6667 1.80e-16 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cF
6 3kif-a3-m1-cF 92 46 0.3191 0.3261 0.6522 8.18e-16 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cF
7 3kif-a3-m1-cJ 93 91 0.9681 0.9785 1.0000 3.25e-64 3kif-a3-m1-cG_3kif-a3-m1-cJ, 3kif-a3-m1-cH_3kif-a3-m1-cJ
8 3kif-a3-m1-cJ 93 48 0.3298 0.3333 0.6458 5.10e-17 3kif-a3-m1-cG_3kif-a3-m1-cJ, 3kif-a3-m1-cH_3kif-a3-m1-cJ
9 3kif-a3-m1-cG 88 88 0.9362 1.0000 1.0000 5.13e-62 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cG_3kif-a3-m1-cJ
10 3kif-a3-m1-cG 88 45 0.3191 0.3409 0.6667 1.35e-16 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cG_3kif-a3-m1-cJ
11 3kif-a3-m1-cG 88 43 0.2979 0.3182 0.6512 7.98e-14 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cG_3kif-a3-m1-cJ
12 3kif-a1-m1-cG 88 88 0.9362 1.0000 1.0000 5.13e-62 3kif-a1-m1-cG_3kif-a1-m1-cA
13 3kif-a1-m1-cG 88 45 0.3191 0.3409 0.6667 1.35e-16 3kif-a1-m1-cG_3kif-a1-m1-cA
14 3kif-a1-m1-cG 88 43 0.2979 0.3182 0.6512 7.98e-14 3kif-a1-m1-cG_3kif-a1-m1-cA
15 3kif-a3-m1-cH 85 85 0.9043 1.0000 1.0000 4.19e-59 3kif-a3-m1-cH_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cI, 3kif-a3-m1-cH_3kif-a3-m1-cJ
16 3kif-a3-m1-cH 85 47 0.3298 0.3647 0.6596 5.11e-17 3kif-a3-m1-cH_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cI, 3kif-a3-m1-cH_3kif-a3-m1-cJ
17 3kih-a1-m1-cB 95 63 0.5957 0.5895 0.8889 1.23e-36 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cB
18 3kih-a1-m1-cB 95 79 0.5106 0.5053 0.6076 4.74e-31 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cB
19 3kih-a1-m1-cC 91 59 0.5638 0.5824 0.8983 1.95e-34 3kih-a1-m1-cA_3kih-a1-m1-cC, 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC
20 3kih-a1-m1-cC 91 79 0.5000 0.5165 0.5949 3.44e-28 3kih-a1-m1-cA_3kih-a1-m1-cC, 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC
21 3kih-a1-m1-cC 91 14 0.0957 0.0989 0.6429 5.7 3kih-a1-m1-cA_3kih-a1-m1-cC, 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC
22 3kih-a1-m1-cD 91 59 0.5532 0.5714 0.8814 6.95e-34 3kih-a1-m1-cE_3kih-a1-m1-cD
23 3kih-a1-m1-cD 91 79 0.5106 0.5275 0.6076 5.74e-31 3kih-a1-m1-cE_3kih-a1-m1-cD
24 3kih-a1-m1-cE 90 58 0.5532 0.5778 0.8966 7.87e-34 3kih-a1-m1-cE_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC, 3kih-a1-m1-cE_3kih-a1-m1-cD
25 3kih-a1-m1-cE 90 79 0.5000 0.5222 0.5949 3.49e-28 3kih-a1-m1-cE_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC, 3kih-a1-m1-cE_3kih-a1-m1-cD
26 3kih-a1-m1-cE 90 13 0.0957 0.1000 0.6923 6.4 3kih-a1-m1-cE_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC, 3kih-a1-m1-cE_3kih-a1-m1-cD
27 3kih-a1-m1-cA 90 58 0.5532 0.5778 0.8966 7.87e-34 3kih-a1-m1-cA_3kih-a1-m1-cC
28 3kih-a1-m1-cA 90 79 0.5000 0.5222 0.5949 3.49e-28 3kih-a1-m1-cA_3kih-a1-m1-cC
29 3kih-a1-m1-cA 90 13 0.0957 0.1000 0.6923 6.4 3kih-a1-m1-cA_3kih-a1-m1-cC
30 7vee-a1-m2-cA 828 52 0.1915 0.0217 0.3462 4.3 7vee-a1-m1-cA_7vee-a1-m2-cA
31 7vee-a1-m1-cA 828 52 0.1915 0.0217 0.3462 4.3 7vee-a1-m1-cA_7vee-a1-m2-cA
32 1g8k-a6-m1-cC 822 80 0.2234 0.0255 0.2625 4.6 1g8k-a6-m1-cA_1g8k-a6-m1-cC
33 1g8k-a6-m1-cA 822 80 0.2234 0.0255 0.2625 4.6 1g8k-a6-m1-cA_1g8k-a6-m1-cC
34 7t2p-a1-m3-cA 493 65 0.1809 0.0345 0.2615 5.0 7t2p-a1-m2-cA_7t2p-a1-m3-cA
35 7t2p-a1-m2-cA 493 65 0.1809 0.0345 0.2615 5.0 7t2p-a1-m2-cA_7t2p-a1-m3-cA
36 5w4a-a2-m1-cD 210 26 0.1170 0.0524 0.4231 5.1 5w4a-a2-m1-cD_5w4a-a2-m1-cB
37 5w4a-a2-m1-cB 212 26 0.1170 0.0519 0.4231 5.3 5w4a-a2-m1-cD_5w4a-a2-m1-cB

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Reference:
Jacob Schwartz et al.

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