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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=87)
DVITVYKDCNYTGFSGGLTIGDYNLARLNSLGVLNDDISSLRITQGYQAILYQDDNFGGA
STVINSDNSCLNTTWNDKVSSIRVIAN

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3hzb-a4-m1-cH 87 87 1.0000 1.0000 1.0000 1.23e-57 3hzb-a4-m1-cG_3hzb-a4-m1-cH
2 3hzb-a4-m1-cG 87 87 1.0000 1.0000 1.0000 1.23e-57 3hzb-a4-m1-cG_3hzb-a4-m1-cH
3 3so1-a2-m1-cB 87 85 0.3563 0.3563 0.3647 2.09e-15 3so1-a2-m1-cB_3so1-a2-m1-cG
4 3so1-a2-m1-cG 88 85 0.3563 0.3523 0.3647 2.39e-15 3so1-a2-m1-cB_3so1-a2-m1-cG
5 1hdf-a1-m2-cB 99 83 0.2759 0.2424 0.2892 0.005 1hdf-a1-m1-cA_1hdf-a1-m2-cB, 1hdf-a1-m2-cA_1hdf-a1-m2-cB
6 1hdf-a1-m2-cA 99 83 0.2759 0.2424 0.2892 0.005 1hdf-a1-m2-cA_1hdf-a1-m2-cB
7 1hdf-a1-m1-cA 99 83 0.2759 0.2424 0.2892 0.005 1hdf-a1-m1-cA_1hdf-a1-m2-cB
8 1ytq-a3-m4-cA 181 85 0.2874 0.1381 0.2941 0.022 1ytq-a3-m1-cA_1ytq-a3-m4-cA, 1ytq-a3-m2-cA_1ytq-a3-m4-cA, 1ytq-a3-m3-cA_1ytq-a3-m4-cA
9 1ytq-a3-m3-cA 181 85 0.2874 0.1381 0.2941 0.022 1ytq-a3-m3-cA_1ytq-a3-m4-cA
10 1ytq-a3-m2-cA 181 85 0.2874 0.1381 0.2941 0.022 1ytq-a3-m2-cA_1ytq-a3-m4-cA
11 1ytq-a3-m1-cA 181 85 0.2874 0.1381 0.2941 0.022 1ytq-a3-m1-cA_1ytq-a3-m4-cA
12 3qk3-a1-m1-cC 176 38 0.1494 0.0739 0.3421 1.7 3qk3-a1-m1-cB_3qk3-a1-m1-cC
13 3qk3-a1-m1-cB 176 38 0.1494 0.0739 0.3421 1.7 3qk3-a1-m1-cB_3qk3-a1-m1-cC
14 4dzh-a1-m2-cA 439 29 0.1379 0.0273 0.4138 3.0 4dzh-a1-m1-cA_4dzh-a1-m2-cA
15 4dzh-a1-m1-cA 439 29 0.1379 0.0273 0.4138 3.0 4dzh-a1-m1-cA_4dzh-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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