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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=88)
DVLKNIADTLEARREAAPQSSYVASLFHKGEDAILKKVAEEAAETLASKDKDKLHLVREV
ADLWFHTVLLTYHGLRPEDVVELHRREG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2a7w-a3-m1-cL 88 88 1.0000 1.0000 1.0000 2.36e-59 2a7w-a3-m1-cI_2a7w-a3-m1-cL, 2a7w-a3-m1-cK_2a7w-a3-m1-cL
2 2a7w-a3-m1-cK 88 88 1.0000 1.0000 1.0000 2.36e-59 2a7w-a3-m1-cK_2a7w-a3-m1-cL
3 2a7w-a3-m1-cI 88 88 1.0000 1.0000 1.0000 2.36e-59 2a7w-a3-m1-cI_2a7w-a3-m1-cL
4 1yvw-a1-m1-cD 90 88 0.4318 0.4222 0.4318 4.94e-14 1yvw-a1-m1-cA_1yvw-a1-m1-cD, 1yvw-a1-m1-cB_1yvw-a1-m1-cD, 1yvw-a1-m1-cC_1yvw-a1-m1-cD
5 1yvw-a1-m1-cC 90 88 0.4318 0.4222 0.4318 4.94e-14 1yvw-a1-m1-cC_1yvw-a1-m1-cD
6 1yvw-a1-m1-cB 90 88 0.4318 0.4222 0.4318 4.94e-14 1yvw-a1-m1-cB_1yvw-a1-m1-cD
7 1yvw-a1-m1-cA 90 88 0.4318 0.4222 0.4318 4.94e-14 1yvw-a1-m1-cA_1yvw-a1-m1-cD
8 1y6x-a3-m5-cA 86 69 0.2500 0.2558 0.3188 0.17 1y6x-a3-m1-cA_1y6x-a3-m5-cA
9 1y6x-a3-m1-cA 86 69 0.2500 0.2558 0.3188 0.17 1y6x-a3-m1-cA_1y6x-a3-m5-cA
10 1y6x-a2-m4-cA 86 69 0.2500 0.2558 0.3188 0.17 1y6x-a2-m1-cA_1y6x-a2-m4-cA
11 1y6x-a2-m3-cA 86 69 0.2500 0.2558 0.3188 0.17 1y6x-a2-m1-cA_1y6x-a2-m3-cA
12 1y6x-a2-m1-cA 86 69 0.2500 0.2558 0.3188 0.17 1y6x-a2-m1-cA_1y6x-a2-m3-cA, 1y6x-a2-m1-cA_1y6x-a2-m4-cA
13 1y6x-a1-m2-cA 86 69 0.2500 0.2558 0.3188 0.17 1y6x-a1-m1-cA_1y6x-a1-m2-cA
14 1y6x-a1-m1-cA 86 69 0.2500 0.2558 0.3188 0.17 1y6x-a1-m1-cA_1y6x-a1-m2-cA
15 7dd9-a1-m1-cG 1129 70 0.2500 0.0195 0.3143 2.0 7dd9-a1-m1-cA_7dd9-a1-m1-cG, 7dd9-a1-m1-cC_7dd9-a1-m1-cG, 7dd9-a1-m1-cE_7dd9-a1-m1-cG
16 7dd9-a1-m1-cE 1129 70 0.2500 0.0195 0.3143 2.0 7dd9-a1-m1-cE_7dd9-a1-m1-cG
17 7dd9-a1-m1-cC 1129 70 0.2500 0.0195 0.3143 2.0 7dd9-a1-m1-cC_7dd9-a1-m1-cG
18 7dd9-a1-m1-cA 1129 70 0.2500 0.0195 0.3143 2.0 7dd9-a1-m1-cA_7dd9-a1-m1-cG
19 3t3o-a1-m2-cA 553 49 0.2045 0.0325 0.3673 2.7 3t3o-a1-m1-cA_3t3o-a1-m2-cA
20 3t3o-a1-m1-cA 553 49 0.2045 0.0325 0.3673 2.7 3t3o-a1-m1-cA_3t3o-a1-m2-cA
21 7bgn-a2-m1-cD 203 56 0.1932 0.0837 0.3036 4.7 7bgn-a2-m1-cD_7bgn-a2-m1-cC
22 7bgn-a2-m1-cC 204 56 0.1932 0.0833 0.3036 4.8 7bgn-a2-m1-cD_7bgn-a2-m1-cC

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Reference:
Jacob Schwartz et al.

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