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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=97)
DWLTLNVGGRYFTTTRSTLVNKEPDSMLAHMFKDKQDHRGAFLIDRSPEYFEPILNYLRH
GQLIVNDGINLLGVLEEARFFGIDSLIEHLEVAIKNS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5bxh-a1-m1-cC 99 97 1.0000 0.9798 1.0000 3.28e-69 5bxh-a1-m1-cE_5bxh-a1-m1-cC
2 5bxh-a1-m1-cE 97 97 1.0000 1.0000 1.0000 4.19e-69 5bxh-a1-m1-cE_5bxh-a1-m1-cC
3 3drz-a1-m1-cE 97 94 0.4948 0.4948 0.5106 5.36e-29 3drz-a1-m1-cD_3drz-a1-m1-cE
4 3drz-a1-m1-cD 95 94 0.4948 0.5053 0.5106 2.69e-27 3drz-a1-m1-cD_3drz-a1-m1-cE
5 5fta-a1-m1-cB 101 100 0.3505 0.3366 0.3400 5.03e-12 5fta-a1-m1-cD_5fta-a1-m1-cB
6 5fta-a1-m1-cA 101 100 0.3505 0.3366 0.3400 5.03e-12 5fta-a1-m1-cD_5fta-a1-m1-cA
7 5fta-a1-m1-cD 99 100 0.3505 0.3434 0.3400 5.13e-12 5fta-a1-m1-cC_5fta-a1-m1-cD, 5fta-a1-m1-cD_5fta-a1-m1-cA, 5fta-a1-m1-cD_5fta-a1-m1-cB
8 5fta-a1-m1-cC 97 98 0.3402 0.3402 0.3367 6.42e-11 5fta-a1-m1-cC_5fta-a1-m1-cD
9 2i2r-a3-m1-cB 124 84 0.3093 0.2419 0.3571 4.54e-07 2i2r-a3-m1-cB_2i2r-a3-m1-cC
10 2i2r-a3-m1-cC 126 84 0.3093 0.2381 0.3571 4.69e-07 2i2r-a3-m1-cB_2i2r-a3-m1-cC
11 4zgc-a1-m1-cA 372 88 0.3505 0.0914 0.3864 9.79e-07 4zgc-a1-m1-cA_4zgc-a1-m1-cB
12 6sgb-a1-m1-cFQ 257 68 0.2887 0.1089 0.4118 9.83e-07 6sgb-a1-m1-cFR_6sgb-a1-m1-cFQ
13 6sgb-a1-m1-cFT 233 68 0.2887 0.1202 0.4118 1.03e-06 6sgb-a1-m1-cFT_6sgb-a1-m1-cFU
14 6sgb-a1-m1-cFR 243 68 0.2887 0.1152 0.4118 1.04e-06 6sgb-a1-m1-cFR_6sgb-a1-m1-cFQ
15 6sgb-a1-m1-cFU 270 68 0.2887 0.1037 0.4118 1.15e-06 6sgb-a1-m1-cFT_6sgb-a1-m1-cFU
16 4zgc-a1-m1-cB 373 90 0.3196 0.0831 0.3444 2.03e-06 4zgc-a1-m1-cA_4zgc-a1-m1-cB
17 7pqu-a1-m1-cD 328 93 0.3608 0.1067 0.3763 8.79e-06 7pqu-a1-m1-cC_7pqu-a1-m1-cD
18 7pqu-a1-m1-cC 328 93 0.3608 0.1067 0.3763 8.79e-06 7pqu-a1-m1-cC_7pqu-a1-m1-cD
19 7f0j-a1-m1-cH 386 83 0.2887 0.0725 0.3373 2.25e-05 7f0j-a1-m1-cF_7f0j-a1-m1-cH
20 7f0j-a1-m1-cF 386 83 0.2887 0.0725 0.3373 2.25e-05 7f0j-a1-m1-cF_7f0j-a1-m1-cH
21 1nn7-a2-m5-cA 105 83 0.2887 0.2667 0.3373 2.48e-05 1nn7-a2-m1-cA_1nn7-a2-m5-cA
22 1nn7-a2-m1-cA 105 83 0.2887 0.2667 0.3373 2.48e-05 1nn7-a2-m1-cA_1nn7-a2-m5-cA
23 7ukh-a1-m1-cD 203 83 0.2784 0.1330 0.3253 9.10e-05 7ukh-a1-m1-cC_7ukh-a1-m1-cD
24 7ukh-a1-m1-cC 203 83 0.2784 0.1330 0.3253 9.10e-05 7ukh-a1-m1-cC_7ukh-a1-m1-cD
25 3kvt-a1-m4-cA 103 88 0.2887 0.2718 0.3182 8.04e-04 3kvt-a1-m2-cA_3kvt-a1-m4-cA
26 3kvt-a1-m2-cA 103 88 0.2887 0.2718 0.3182 8.04e-04 3kvt-a1-m2-cA_3kvt-a1-m4-cA
27 3qae-a1-m2-cA 370 68 0.1959 0.0514 0.2794 0.008 3qae-a1-m1-cA_3qae-a1-m2-cA
28 3qae-a1-m1-cA 370 68 0.1959 0.0514 0.2794 0.008 3qae-a1-m1-cA_3qae-a1-m2-cA
29 7re5-a1-m1-cE 107 45 0.1546 0.1402 0.3333 0.018 7re5-a1-m1-cE_7re5-a1-m1-cA
30 7re5-a1-m1-cA 108 45 0.1546 0.1389 0.3333 0.018 7re5-a1-m1-cE_7re5-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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