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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=65)
EDLQCVCLKTTSGINPRHISSLEVIGAGLHCPSPQLIATLKTGRKICLDQQNPLYKKIIK
RLLKS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1plf-a1-m1-cD 65 65 1.0000 1.0000 1.0000 1.94e-42 1plf-a1-m1-cA_1plf-a1-m1-cD, 1plf-a1-m1-cB_1plf-a1-m1-cD, 1plf-a1-m1-cC_1plf-a1-m1-cD
2 1plf-a1-m1-cB 65 65 1.0000 1.0000 1.0000 1.94e-42 1plf-a1-m1-cB_1plf-a1-m1-cD
3 1plf-a1-m1-cC 63 63 0.9692 1.0000 1.0000 1.46e-40 1plf-a1-m1-cA_1plf-a1-m1-cC, 1plf-a1-m1-cC_1plf-a1-m1-cD
4 1plf-a1-m1-cA 63 63 0.9692 1.0000 1.0000 1.46e-40 1plf-a1-m1-cA_1plf-a1-m1-cC, 1plf-a1-m1-cA_1plf-a1-m1-cD
5 4r9w-a1-m2-cB 64 64 0.7538 0.7656 0.7656 2.24e-30 4r9w-a1-m1-cA_4r9w-a1-m2-cB, 4r9w-a1-m2-cA_4r9w-a1-m2-cB
6 4r9y-a1-m1-cD 65 64 0.7538 0.7538 0.7656 2.96e-30 4r9y-a1-m1-cB_4r9y-a1-m1-cD
7 4r9y-a1-m1-cB 65 64 0.7538 0.7538 0.7656 2.96e-30 4r9y-a1-m1-cB_4r9y-a1-m1-cD
8 1pfn-a1-m1-cD 68 65 0.7231 0.6912 0.7231 7.08e-29 1pfn-a1-m1-cB_1pfn-a1-m1-cD
9 1pfn-a1-m1-cC 68 65 0.7231 0.6912 0.7231 7.08e-29 1pfn-a1-m1-cB_1pfn-a1-m1-cC
10 1pfn-a1-m1-cB 68 65 0.7231 0.6912 0.7231 7.08e-29 1pfn-a1-m1-cB_1pfn-a1-m1-cC, 1pfn-a1-m1-cB_1pfn-a1-m1-cD
11 1f9q-a1-m1-cC 62 62 0.7231 0.7581 0.7581 9.59e-29 1f9q-a1-m1-cB_1f9q-a1-m1-cC
12 1f9q-a1-m1-cB 62 62 0.7231 0.7581 0.7581 9.59e-29 1f9q-a1-m1-cB_1f9q-a1-m1-cC
13 4r9w-a1-m2-cA 62 62 0.7231 0.7581 0.7581 1.19e-28 4r9w-a1-m2-cA_4r9w-a1-m2-cB
14 4r9w-a1-m1-cA 62 62 0.7231 0.7581 0.7581 1.19e-28 4r9w-a1-m1-cA_4r9w-a1-m2-cB
15 4hsv-a1-m1-cD 65 64 0.7231 0.7231 0.7344 1.86e-27 4hsv-a1-m1-cA_4hsv-a1-m1-cD, 4hsv-a1-m1-cC_4hsv-a1-m1-cD
16 4hsv-a1-m1-cA 65 64 0.7231 0.7231 0.7344 1.86e-27 4hsv-a1-m1-cA_4hsv-a1-m1-cD
17 4hsv-a1-m1-cC 59 57 0.6615 0.7288 0.7544 4.66e-25 4hsv-a1-m1-cC_4hsv-a1-m1-cD
18 1tvx-a1-m1-cD 71 62 0.5692 0.5211 0.5968 3.98e-21 1tvx-a1-m1-cB_1tvx-a1-m1-cD, 1tvx-a1-m1-cC_1tvx-a1-m1-cD
19 1tvx-a1-m1-cB 71 62 0.5692 0.5211 0.5968 3.98e-21 1tvx-a1-m1-cB_1tvx-a1-m1-cD
20 1tvx-a1-m1-cC 64 61 0.5692 0.5781 0.6066 8.46e-21 1tvx-a1-m1-cA_1tvx-a1-m1-cC, 1tvx-a1-m1-cC_1tvx-a1-m1-cD
21 1tvx-a1-m1-cA 64 61 0.5692 0.5781 0.6066 8.46e-21 1tvx-a1-m1-cA_1tvx-a1-m1-cC
22 2mgs-a1-m1-cB 71 62 0.4308 0.3944 0.4516 3.53e-17 2mgs-a1-m1-cA_2mgs-a1-m1-cB
23 2mgs-a1-m1-cA 71 62 0.4308 0.3944 0.4516 3.53e-17 2mgs-a1-m1-cA_2mgs-a1-m1-cB
24 1msh-a1-m1-cB 72 64 0.4769 0.4306 0.4844 9.92e-17 1msh-a1-m1-cA_1msh-a1-m1-cB
25 1msh-a1-m1-cA 72 64 0.4769 0.4306 0.4844 9.92e-17 1msh-a1-m1-cA_1msh-a1-m1-cB
26 6wzj-a1-m1-cE 63 62 0.4462 0.4603 0.4677 4.10e-15 6wzj-a1-m1-cF_6wzj-a1-m1-cE
27 6wzk-a1-m1-cF 64 62 0.4308 0.4375 0.4516 1.52e-14 6wzk-a1-m1-cE_6wzk-a1-m1-cF
28 6wzk-a1-m1-cE 64 62 0.4308 0.4375 0.4516 1.52e-14 6wzk-a1-m1-cE_6wzk-a1-m1-cF
29 1mi2-a1-m1-cB 73 62 0.4462 0.3973 0.4677 3.09e-14 1mi2-a1-m1-cA_1mi2-a1-m1-cB
30 1mi2-a1-m1-cA 73 62 0.4462 0.3973 0.4677 3.09e-14 1mi2-a1-m1-cA_1mi2-a1-m1-cB
31 3n52-a3-m1-cB 71 62 0.4462 0.4085 0.4677 3.18e-14 3n52-a3-m1-cD_3n52-a3-m1-cB
32 3n52-a3-m1-cD 70 62 0.4462 0.4143 0.4677 3.50e-14 3n52-a3-m1-cC_3n52-a3-m1-cD, 3n52-a3-m1-cD_3n52-a3-m1-cB
33 3n52-a3-m1-cC 67 62 0.4462 0.4328 0.4677 3.51e-14 3n52-a3-m1-cC_3n52-a3-m1-cD
34 1rod-a1-m1-cB 72 66 0.4308 0.3889 0.4242 2.07e-13 1rod-a1-m1-cA_1rod-a1-m1-cB
35 1rod-a1-m1-cA 72 66 0.4308 0.3889 0.4242 2.07e-13 1rod-a1-m1-cA_1rod-a1-m1-cB
36 6wzj-a1-m1-cF 59 62 0.4462 0.4915 0.4677 1.55e-12 6wzj-a1-m1-cF_6wzj-a1-m1-cE
37 1qe6-a3-m2-cB 71 64 0.3231 0.2958 0.3281 2.53e-08 1qe6-a3-m2-cA_1qe6-a3-m2-cB, 1qe6-a3-m2-cB_1qe6-a3-m1-cD
38 1qe6-a3-m1-cD 72 64 0.3231 0.2917 0.3281 2.92e-08 1qe6-a3-m2-cB_1qe6-a3-m1-cD
39 1qe6-a3-m2-cA 68 62 0.3231 0.3088 0.3387 3.92e-08 1qe6-a3-m2-cA_1qe6-a3-m2-cB
40 1o7y-a1-m1-cC 63 65 0.3846 0.3968 0.3846 4.27e-07 1o7y-a1-m1-cB_1o7y-a1-m1-cC, 1o7y-a1-m1-cC_1o7y-a1-m1-cA, 1o7y-a1-m1-cD_1o7y-a1-m1-cC
41 1o7y-a1-m1-cA 67 65 0.3846 0.3731 0.3846 5.14e-07 1o7y-a1-m1-cC_1o7y-a1-m1-cA
42 1o7y-a1-m1-cD 62 64 0.3846 0.4032 0.3906 6.40e-07 1o7y-a1-m1-cD_1o7y-a1-m1-cC
43 1o7y-a1-m1-cB 62 63 0.3846 0.4032 0.3968 8.88e-07 1o7y-a1-m1-cB_1o7y-a1-m1-cC
44 2r3z-a1-m1-cD 64 65 0.3538 0.3594 0.3538 2.72e-04 2r3z-a1-m1-cD_2r3z-a1-m1-cA
45 2r3z-a1-m1-cA 68 65 0.3538 0.3382 0.3538 2.85e-04 2r3z-a1-m1-cB_2r3z-a1-m1-cA, 2r3z-a1-m1-cD_2r3z-a1-m1-cA
46 2r3z-a1-m1-cB 67 65 0.3538 0.3433 0.3538 2.99e-04 2r3z-a1-m1-cB_2r3z-a1-m1-cA
47 4mhe-a2-m1-cC 61 56 0.2769 0.2951 0.3214 0.24 4mhe-a2-m1-cC_4mhe-a2-m1-cB
48 4mhe-a2-m1-cB 69 56 0.2769 0.2609 0.3214 0.29 4mhe-a2-m1-cC_4mhe-a2-m1-cB
49 2fj2-a2-m1-cC 68 32 0.1692 0.1618 0.3438 0.86 2fj2-a2-m1-cD_2fj2-a2-m1-cC
50 2fj2-a2-m1-cD 67 32 0.1692 0.1642 0.3438 0.87 2fj2-a2-m1-cD_2fj2-a2-m1-cC
51 5ltl-a1-m1-cA 67 56 0.2462 0.2388 0.2857 1.2 5ltl-a1-m1-cA_5ltl-a1-m1-cB
52 5ltl-a1-m1-cB 68 56 0.2462 0.2353 0.2857 1.3 5ltl-a1-m1-cA_5ltl-a1-m1-cB
53 5yy3-a1-m4-cA 577 45 0.1385 0.0156 0.2000 4.1 5yy3-a1-m2-cA_5yy3-a1-m4-cA, 5yy3-a1-m3-cA_5yy3-a1-m4-cA
54 5yy3-a1-m3-cA 577 45 0.1385 0.0156 0.2000 4.1 5yy3-a1-m3-cA_5yy3-a1-m4-cA
55 5yy3-a1-m2-cA 577 45 0.1385 0.0156 0.2000 4.1 5yy3-a1-m2-cA_5yy3-a1-m4-cA
56 7qcn-a1-m1-cB 407 27 0.1846 0.0295 0.4444 6.9 7qcn-a1-m1-cA_7qcn-a1-m1-cB
57 7qcn-a1-m1-cA 407 27 0.1846 0.0295 0.4444 6.9 7qcn-a1-m1-cA_7qcn-a1-m1-cB
58 6mhk-a1-m1-cB 534 46 0.2769 0.0337 0.3913 7.4 6mhk-a1-m1-cB_6mhk-a1-m1-cA
59 6mhk-a1-m1-cA 536 46 0.2769 0.0336 0.3913 7.4 6mhk-a1-m1-cB_6mhk-a1-m1-cA
60 7zmc-a1-m1-cA 532 29 0.1846 0.0226 0.4138 8.1 7zmc-a1-m1-cA_7zmc-a1-m1-cB
61 7zmc-a1-m1-cB 539 29 0.1846 0.0223 0.4138 8.1 7zmc-a1-m1-cA_7zmc-a1-m1-cB
62 7zsk-a1-m1-cC 1476 29 0.1846 0.0081 0.4138 8.3 7zsk-a1-m1-cB_7zsk-a1-m1-cC, 7zsk-a1-m1-cC_7zsk-a1-m1-cA, 7zsk-a1-m1-cC_7zsk-a1-m1-cD
63 7zsk-a1-m1-cB 1476 29 0.1846 0.0081 0.4138 8.3 7zsk-a1-m1-cB_7zsk-a1-m1-cA, 7zsk-a1-m1-cB_7zsk-a1-m1-cC
64 7zsk-a1-m1-cD 1482 29 0.1846 0.0081 0.4138 8.3 7zsk-a1-m1-cC_7zsk-a1-m1-cD
65 7zsk-a1-m1-cA 1482 29 0.1846 0.0081 0.4138 8.3 7zsk-a1-m1-cB_7zsk-a1-m1-cA, 7zsk-a1-m1-cC_7zsk-a1-m1-cA
66 4pdo-a1-m1-cB 261 50 0.2769 0.0690 0.3600 9.1 4pdo-a1-m1-cA_4pdo-a1-m1-cB
67 4pdo-a1-m1-cA 261 50 0.2769 0.0690 0.3600 9.1 4pdo-a1-m1-cA_4pdo-a1-m1-cB
68 5ek7-a1-m1-cB 286 28 0.1846 0.0420 0.4286 9.6 5ek7-a1-m1-cA_5ek7-a1-m1-cB
69 5ek7-a1-m1-cA 286 28 0.1846 0.0420 0.4286 9.6 5ek7-a1-m1-cA_5ek7-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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