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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=82)
EDPEVLFKNKGCVACHAIDTKMVGPAYKDVAAKFAGQAGAEAELAQRIKNGSQGVWGPIP
MPPNAVSDDEAQTLAKWVLSQK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3x39-a2-m3-cB 82 82 1.0000 1.0000 1.0000 6.01e-57 3x39-a2-m1-cB_3x39-a2-m3-cB
2 3x39-a2-m1-cB 82 82 1.0000 1.0000 1.0000 6.01e-57 3x39-a2-m1-cB_3x39-a2-m3-cB
3 4zid-a1-m2-cA 80 79 0.5488 0.5625 0.5696 1.22e-26 4zid-a1-m1-cA_4zid-a1-m2-cA
4 4zid-a1-m1-cA 80 79 0.5488 0.5625 0.5696 1.22e-26 4zid-a1-m1-cA_4zid-a1-m2-cA
5 1ynr-a1-m1-cC 80 79 0.5488 0.5625 0.5696 1.22e-26 1ynr-a1-m1-cA_1ynr-a1-m1-cC, 1ynr-a1-m1-cD_1ynr-a1-m1-cC
6 1ynr-a1-m1-cA 80 79 0.5488 0.5625 0.5696 1.22e-26 1ynr-a1-m1-cA_1ynr-a1-m1-cC, 1ynr-a1-m1-cD_1ynr-a1-m1-cA
7 1ynr-a1-m1-cD 79 77 0.5366 0.5570 0.5714 1.89e-26 1ynr-a1-m1-cD_1ynr-a1-m1-cA, 1ynr-a1-m1-cD_1ynr-a1-m1-cC
8 5aus-a1-m1-cA 79 79 0.5488 0.5696 0.5696 5.28e-25 5aus-a1-m1-cA_5aus-a1-m1-cC
9 5aus-a1-m1-cC 83 82 0.5488 0.5422 0.5488 2.03e-24 5aus-a1-m1-cA_5aus-a1-m1-cC
10 5aur-a2-m1-cG 83 82 0.5488 0.5422 0.5488 2.03e-24 5aur-a2-m1-cE_5aur-a2-m1-cG
11 5aur-a2-m1-cE 83 82 0.5488 0.5422 0.5488 2.03e-24 5aur-a2-m1-cE_5aur-a2-m1-cG
12 3x15-a2-m1-cJ 87 89 0.3415 0.3218 0.3146 1.40e-07 3x15-a2-m1-cD_3x15-a2-m1-cJ
13 3x15-a2-m1-cD 87 89 0.3415 0.3218 0.3146 1.40e-07 3x15-a2-m1-cD_3x15-a2-m1-cJ
14 3x15-a1-m1-cG 87 89 0.3415 0.3218 0.3146 1.40e-07 3x15-a1-m1-cA_3x15-a1-m1-cG
15 3x15-a1-m1-cA 87 89 0.3415 0.3218 0.3146 1.40e-07 3x15-a1-m1-cA_3x15-a1-m1-cG
16 2zxy-a1-m2-cA 86 88 0.3293 0.3140 0.3068 5.19e-07 2zxy-a1-m1-cA_2zxy-a1-m2-cA
17 2zxy-a1-m1-cA 86 88 0.3293 0.3140 0.3068 5.19e-07 2zxy-a1-m1-cA_2zxy-a1-m2-cA
18 5z25-a1-m3-cA 96 32 0.1463 0.1250 0.3750 0.007 5z25-a1-m2-cA_5z25-a1-m3-cA
19 5z25-a1-m2-cA 96 32 0.1463 0.1250 0.3750 0.007 5z25-a1-m2-cA_5z25-a1-m3-cA
20 1i8o-a2-m2-cA 113 35 0.1951 0.1416 0.4571 0.022 1i8o-a2-m1-cA_1i8o-a2-m2-cA
21 1i8o-a2-m1-cA 113 35 0.1951 0.1416 0.4571 0.022 1i8o-a2-m1-cA_1i8o-a2-m2-cA
22 2vk4-a2-m1-cC 555 79 0.2561 0.0378 0.2658 0.33 2vk4-a2-m1-cC_2vk4-a2-m1-cD
23 2vk4-a2-m1-cD 560 79 0.2561 0.0375 0.2658 0.34 2vk4-a2-m1-cC_2vk4-a2-m1-cD
24 2zbo-a7-m1-cK 86 74 0.2561 0.2442 0.2838 0.60 2zbo-a7-m1-cA_2zbo-a7-m1-cK, 2zbo-a7-m1-cC_2zbo-a7-m1-cK, 2zbo-a7-m1-cI_2zbo-a7-m1-cK
25 2zbo-a7-m1-cI 86 74 0.2561 0.2442 0.2838 0.60 2zbo-a7-m1-cI_2zbo-a7-m1-cK
26 2zbo-a7-m1-cE 86 74 0.2561 0.2442 0.2838 0.60 2zbo-a7-m1-cC_2zbo-a7-m1-cE
27 2zbo-a7-m1-cC 86 74 0.2561 0.2442 0.2838 0.60 2zbo-a7-m1-cC_2zbo-a7-m1-cE, 2zbo-a7-m1-cC_2zbo-a7-m1-cK
28 2zbo-a7-m1-cA 86 74 0.2561 0.2442 0.2838 0.60 2zbo-a7-m1-cA_2zbo-a7-m1-cK
29 3o5c-a2-m1-cD 307 11 0.1098 0.0293 0.8182 0.77 3o5c-a2-m1-cC_3o5c-a2-m1-cD
30 3o5c-a2-m1-cC 304 11 0.1098 0.0296 0.8182 0.80 3o5c-a2-m1-cC_3o5c-a2-m1-cD
31 3hq9-a1-m1-cA 312 11 0.1098 0.0288 0.8182 3.0 3hq9-a1-m1-cB_3hq9-a1-m1-cA
32 3hq9-a1-m1-cB 306 11 0.1098 0.0294 0.8182 3.0 3hq9-a1-m1-cB_3hq9-a1-m1-cA
33 6t5e-a1-m3-cA 439 28 0.1341 0.0251 0.3929 3.4 6t5e-a1-m2-cA_6t5e-a1-m3-cA
34 6t5e-a1-m2-cA 439 28 0.1341 0.0251 0.3929 3.4 6t5e-a1-m2-cA_6t5e-a1-m3-cA
35 1nml-a2-m2-cA 316 12 0.0854 0.0222 0.5833 7.2 1nml-a2-m1-cA_1nml-a2-m2-cA
36 1nml-a2-m1-cA 316 12 0.0854 0.0222 0.5833 7.2 1nml-a2-m1-cA_1nml-a2-m2-cA
37 4aal-a1-m1-cA 320 12 0.0976 0.0250 0.6667 8.9 4aal-a1-m1-cB_4aal-a1-m1-cA
38 4aan-a1-m2-cA 322 12 0.0976 0.0248 0.6667 8.9 4aan-a1-m1-cA_4aan-a1-m2-cA
39 4aan-a1-m1-cA 322 12 0.0976 0.0248 0.6667 8.9 4aan-a1-m1-cA_4aan-a1-m2-cA
40 4aal-a1-m1-cB 319 12 0.0976 0.0251 0.6667 9.1 4aal-a1-m1-cB_4aal-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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